1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattattcgctctaattatcttaatcataaataaataaataacttaaccacgtattcattattatttgtttactatttttttttatccttaaatagg...
species | Physcomitrella patens |
transcript | PP1S47_1V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAGEST: gi|208383133|gb|DC919580.1|DC919580
genomic: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
EST: AACGTGGGGACTACATTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAGEST: gi|208398653|gb|DC920548.1|DC920548
genomic: AACGTGGGGACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
EST: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAGEST: gi|162165202|gb|FC341171.1|FC341171
genomic: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
EST: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAEST: gi|208373023|gb|DC948788.1|DC948788
genomic: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAA
EST: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAGEST: gi|208371918|gb|DC948321.1|DC948321
genomic: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
EST: ACTACANTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAGEST: gi|37839308|gb|BJ597316.1|BJ597316
genomic: ACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
EST: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG GTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
genomic: CCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattatt ... tatggggcagGTCGATGGCATGGACTGCTTAGCTGTGAAGCAGGCGGTCAAGTATGCTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAGgtttattattcgctctaattatcttaatcataaataaataaataacttaaccacgtattcattattatttgtttactatttttttttatccttaaatagg
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