1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGCCGCACAGCTCATCCCTCGATTTTTCAAGCATTTTCCTGATCTCTCCTCGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaattttctcctcccttggtgttgcttttgaggactggttctaaaccctagccggagttaggatgtgaagctgtttggagcattggagccttca...
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|100361575|gb|BY984075.1|BY984075
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGGGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|18345792|gb|BJ177835.1|BJ177835
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|18326192|gb|BJ158191.1|BJ158191
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATTAGCTTGGG ATTCGGGTGCAGGCGATTAGAGEST: gi|208383270|gb|DC907244.1|DC907244
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAG
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGANCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|162177459|gb|FC353720.1|FC353720
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|18325198|gb|BJ157194.1|BJ157194
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|100363091|gb|BY984352.1|BY984352
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|100386966|gb|BY988235.1|BY988235
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|18325679|gb|BJ157676.1|BJ157676
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|18352423|gb|BJ184477.1|BJ184477
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCAEST: gi|100359470|gb|BY984270.1|BY984270
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
EST: CGGACGCAATCAATGCACAGCTGGATTTGTGCGGGGAAGATGAGCTTGGG ATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
genomic: CGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaat ... gcaataacagATTCGGGTGCAGGCGATTAGAGGATTGCCGCTTTTATGCAAAGACACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCGCACAGCTCATCCCTCGATTTTTCAAGCATTTTCCTGATCTCTCCTCGGACGCAATCAATGCACAGCTGGATTTGTGCGAGGAAGATGAGCTTGGGgtgagttaattttctcctcccttggtgttgcttttgaggactggttctaaaccctagccggagttaggatgtgaagctgtttggagcattggagccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT