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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCGAATTGCGAGTGGACCTCATCAGCGGTTTCGATGCCGCAGCAGATCTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcctgttcattataatcacagaacgtcattaacagctaccgttgccgttcataatttgaaagcatccagagatgtcatccttcagtggtctaatctacagagttttgatttggagtatcag

Basic information

species Physcomitrella patens
transcript PP1S47_18V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196538|gb|FC375452.1|FC375452
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|18355442|gb|BJ187501.1|BJ187501
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|18325007|gb|BJ157003.1|BJ157003
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|18344020|gb|BJ176059.1|BJ176059
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAAT-AAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|162172646|gb|FC348027.1|FC348027
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|162158873|gb|FC335396.1|FC335396
EST:     CCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|18355737|gb|BJ187796.1|BJ187796
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|18349013|gb|BJ181062.1|BJ181062
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|162179654|gb|FC355712.1|FC355712
EST:     CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
EST: gi|18373250|gb|BJ204852.1|BJ204852
EST:     CTCCCCGTTTTGTTGAGAGACAAGCCCTTGCCTGTGATTGTCACTCCAAG                         GGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA
genomic: CTCCCCGTTTTGTTGAAAGACAAGCCCTTGCCTGTGATTGTCACTCCAAGgtgacctcct ... ggagtatcagGGCTAAATGGGAAGGTGGAGAATACAAGGGTAGTGAAGAATCAAGGCAAGA