1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTTTCAAGTAGTTGCGAGGACCAGGATTCAAGATTCTTTCTGAGGGGTTCACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGTgtaagcgagttttgtgctcatcttatcggtgaaaactaatgctggttaagttcattctgtaatcagtagttacttaactaatagggaacgataggggctc...
species | Physcomitrella patens |
transcript | PP1S47_179V6.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGT GCATGAGAATATGAATTCAGGCGGTGGAGAGAGCGTGCAAATGCAGCCCCAEST: gi|100452236|gb|CJ975169.1|CJ975169
genomic: CACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGTgtaagcgagt ... tcggtgttagGCATGAGAATATGAATTCAGGCGGTGGAGAGAGCGTGCAAATGCAGCCCCA
EST: CACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGT GCATGAGAATATGAGTTCAGGCGGTGGAGAGAGCGTGCAAATGCAGCCCCAEST: gi|22492172|gb|BU052095.1|BU052095
genomic: CACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGTgtaagcgagt ... tcggtgttagGCATGAGAATATGAATTCAGGCGGTGGAGAGAGCGTGCAAATGCAGCCCCA
EST: CACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGT GCATGAGAATATGAATTCAGGCGGTGGAGAGAGCGTGCAAATGCAGCCCCA
genomic: CACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGTgtaagcgagt ... tcggtgttagGCATGAGAATATGAATTCAGGCGGTGGAGAGAGCGTGCAAATGCAGCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTCAAGTAGTTGCGAGGACCAGGATTCAAGATTCTTTCTGAGGGGTTCACACATATGCTTGAGCAAGGTTGGCCGAGCTCTACAGTAATATTTTCGTgtaagcgagttttgtgctcatcttatcggtgaaaactaatgctggttaagttcattctgtaatcagtagttacttaactaatagggaacgataggggctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaactaa