1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAGAGCAGTGAGCACTCTGCAACAGTCGTAGACACGTTAAAGAGTCGTCTTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggatggcacagtgccatcctgcatttgccaatgtgaatgttgaaggcgaacattgtgttttaatgtaaagttgagttgtaatgtatctgtttttaaaacctgcag
species | Physcomitrella patens |
transcript | PP1S47_13V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATGAACACTACNAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|162228050|gb|FC404631.1|FC404631
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|67718132|gb|BJ968391.1|BJ968391
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|100352908|gb|BY945510.1|BY945510
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAA-TEST: gi|100389604|gb|BY952410.1|BY952410
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|208384936|gb|DC903443.1|DC903443
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAGCAGTGAGCACTCTGCAACAGTCGTAGACACGTTAAAGAGTCGTCTTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggatggcacagtgccatcctgcatttgccaatgtgaatgttgaaggcgaacattgtgttttaatgtaaagttgagttgtaatgtatctgtttttaaaacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG