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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatgatcctttattcttcacgtccccgtgattgaaacccgtgtccttgcgtgtgttgtatgcacctccaaggatcttgctcagtcttggttctc...

Basic information

species Physcomitrella patens
transcript PP1S479_10V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S479_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv17s0053g00620.t01 (Vitis vinifera), 5'ss of exon 2
ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgt---tagtgatgatcctttattcttcacgtccccgtgattgaaacccgtgtccttgcgtgtgttgtatgcacctccaaggatcttgctcagtcttggttctc
||| |||| |||||||| |||||||||||| ||||||| ||||| ||||| ||||| ||  | || ||||    |    || |||  | | |  |  |||| |   ||   ||  | |    ||    |  |||  |          || |   |    |    ||     
ATGAATAGGGAGAAGCTTATGAAGATGGCTGGTGCAGTTCGCACCGGTGGAAAGGGTAGCATGAGAAGgtgcaaaaccctgttccagtgtcccacttgtccactcaat---aattcattcttttattgggtttgggttgtttggggggggtgggggggggggggggggggg

upper sequence: PP1S479_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ08565 (Selaginella moellendorffii), 5'ss of exon 1
--------------------------------ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatgatcctttattcttcacgtccccgtgattgaaacccgtgtccttgcgtgtgttgtatgcacctccaaggatcttgctcagtcttggttctc
                                ||| || |||||||||| ||||||||||||||||| |||||||| ||||| |||||||  || |||||||   |      | ||        | |    |||  ||  | |   ||   ||  || |  ||   |||                               
ATTTCTCACTCGTTTGCTGCGGATTTTGCTAGATGAATCGAGAGAAGCTGATGAAGATGGCTAGTGCTGTGCGCACCGGTGGAAAGGGCACAGTGAGGAGgtatttcggcggcattgg------atgatttcgttgtttgagctgatggatttttgttttctg-gcgcag------------------------------

upper sequence: PP1S479_10V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ19629 (Selaginella moellendorffii), 5'ss of exon 1
--------------------------------ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatgatcctttattcttcacgtccccgtgattgaaacccgtgtccttgcgtgtgttgtatgcacctccaaggatcttgctcagtcttggttctc
                                ||| || |||||||||| ||||||||||||||||| |||||||| ||||| |||||||  || |||||||         | |       ||   |    |||  ||  | |   ||   ||  || |  ||   |||                               
TTTCTCACTCATTTGCCGCGGGATTTTGCCAGATGAATCGAGAGAAGCTGATGAAGATGGCTAGTGCTGTGCGCACCGGTGGAAAGGGCACAGTGAGGAGgt-------atttcggcggcattggtgatttcgttgtttgagctgatggatttttgttttctg-gcgcag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571898|gb|BJ944722.1|BJ944722
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162274367|gb|FC450394.1|FC450394
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162244329|gb|FC421007.1|FC421007
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18342856|gb|BJ174892.1|BJ174892
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18353276|gb|BJ185331.1|BJ185331
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162240484|gb|FC414373.1|FC414373
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162224828|gb|FC400828.1|FC400828
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18337154|gb|BJ169178.1|BJ169178
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162279458|gb|FC455574.1|FC455574
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162224827|gb|FC400827.1|FC400827
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|37833743|gb|BJ591755.1|BJ591755
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18328912|gb|BJ160918.1|BJ160918
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGATGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162229541|gb|FC405875.1|FC405875
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|37837361|gb|BJ595369.1|BJ595369
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67507846|gb|BJ940722.1|BJ940722
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18328944|gb|BJ160950.1|BJ160950
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67575474|gb|BJ948298.1|BJ948298
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67698944|gb|BJ959177.1|BJ959177
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162235488|gb|FC411311.1|FC411311
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162235489|gb|FC411312.1|FC411312
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67576767|gb|BJ949591.1|BJ949591
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162244328|gb|FC421006.1|FC421006
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67579122|gb|BJ951273.1|BJ951273
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18356803|gb|BJ188862.1|BJ188862
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18337124|gb|BJ169148.1|BJ169148
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGATGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162222208|gb|FC397644.1|FC397644
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18357996|gb|BJ190055.1|BJ190055
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67695264|gb|BJ955497.1|BJ955497
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162227817|gb|FC403967.1|FC403967
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162274368|gb|FC450395.1|FC450395
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|37834740|gb|BJ592752.1|BJ592752
EST:     AGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: AGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162239783|gb|FC417182.1|FC417182
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162274496|gb|FC450731.1|FC450731
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67699627|gb|BJ959860.1|BJ959860
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|67576136|gb|BJ948960.1|BJ948960
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162279459|gb|FC455575.1|FC455575
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162241574|gb|FC414696.1|FC414696
EST:     TTGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGTCAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|18353616|gb|BJ185671.1|BJ185671
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162222207|gb|FC397643.1|FC397643
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162159448|gb|FC336237.1|FC336237
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|37835358|gb|BJ593370.1|BJ593370
EST:     ATGAAGAAGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|37822000|gb|BJ580066.1|BJ580066
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162279226|gb|FC455773.1|FC455773
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|37835088|gb|BJ593100.1|BJ593100
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162229542|gb|FC405876.1|FC405876
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
EST: gi|162203658|gb|FC379144.1|FC379144
EST:     ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG                         GAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA
genomic: ATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatg ... cgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAGgttagtgatgatcctttattcttcacgtccccgtgattgaaacccgtgtccttgcgtgtgttgtatgcacctccaaggatcttgctcagtcttggttctc

- - - - - - - - -  TGAAGA
- - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - TGGTGG