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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGGCTCTCGAAAAGAGTGCAGATGACAAACATTCTGTGAAGGCTCCAATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtttacccgctgcattcgtggtctgctcattagatggtgatgcatatcatcattgctgaggtgagtggagtatgcagtttgatggcatggtat...

Basic information

species Physcomitrella patens
transcript PP1S475_5V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19780785|gb|BQ039612.1|BQ039612
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|162239073|gb|FC418500.1|FC418500
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100359621|gb|BY947072.1|BY947072
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208363554|gb|DC939759.1|DC939759
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208367185|gb|DC935971.1|DC935971
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100444306|gb|BY982335.1|BY982335
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100438940|gb|BY961880.1|BY961880
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100451898|gb|CJ974997.1|CJ974997
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100380074|gb|BY968833.1|BY968833
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100352993|gb|BY945553.1|BY945553
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208362744|gb|DC950544.1|DC950544
EST:     GGAAGGTTAAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGC-TACACTGGCAAAAAAGATGAAGGA
genomic: GGAAGGTT-AAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208353611|gb|DC929696.1|DC929696
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100368731|gb|BY967143.1|BY967143
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208387979|gb|DC941660.1|DC941660
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208388933|gb|DC932961.1|DC932961
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100361247|gb|BY946987.1|BY946987
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100423148|gb|BY958170.1|BY958170
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208375821|gb|DC926913.1|DC926913
EST:     AAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: AAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208356449|gb|DC914311.1|DC914311
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208393625|gb|DC904341.1|DC904341
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100436356|gb|BY961176.1|BY961176
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208364585|gb|DC935370.1|DC935370
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208385419|gb|DC956631.1|DC956631
EST:     TATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTNTACTCCATGTACGGACACGTGCTTACACTGGCNAAAAAGATGAAGGA
genomic: TATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100417104|gb|BY957169.1|BY957169
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208390544|gb|DC937476.1|DC937476
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100399593|gb|BY972796.1|BY972796
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208377161|gb|DC910893.1|DC910893
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208356379|gb|DC934397.1|DC934397
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100386922|gb|BY988191.1|BY988191
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208386010|gb|DC956526.1|DC956526
EST:     TAAAGTGTTCATCGT                         ATTNTACTCCATGTACGGACACGTGCNTACACTGGCAAAAAAGATGAAGGA
genomic: TAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208397445|gb|DC908293.1|DC908293
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100361311|gb|BY965777.1|BY965777
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208373459|gb|DC931890.1|DC931890
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA