1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGTCACACACGCTGTGCAGGCGCTGTGGCCGCAGAAGCTTTCACATCCAGAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggctttcttcctggataattccttcattctaattaaggccggaattgtcttgttacctgccatcggtcgttatcagcccttcacggttttataa...
species | Physcomitrella patens |
transcript | PP1S475_18V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|162230854|gb|FC406693.1|FC406693
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|67571436|gb|BJ944260.1|BJ944260
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|162231822|gb|FC408584.1|FC408584
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|162231823|gb|FC408585.1|FC408585
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|67694768|gb|BJ955001.1|BJ955001
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|37837255|gb|BJ595263.1|BJ595263
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|18338750|gb|BJ170774.1|BJ170774
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|18325185|gb|BJ157181.1|BJ157181
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|67718429|gb|BJ968688.1|BJ968688
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|67701834|gb|BJ962067.1|BJ962067
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|18326076|gb|BJ158075.1|BJ158075
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|18357894|gb|BJ189953.1|BJ189953
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|67720324|gb|BJ970583.1|BJ970583
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|162224987|gb|FC401403.1|FC401403
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTAEST: gi|18333873|gb|BJ165889.1|BJ165889
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
EST: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCT ACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
genomic: GAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggct ... catgtcccagACAATTGGAGCGTGAAGGCTATCAGGAGGAAGACTACCGGAACTGGACGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTCACACACGCTGTGCAGGCGCTGTGGCCGCAGAAGCTTTCACATCCAGAAGAGCCGCTGCTCGGCTTGTGCCTACCCTGCCGCGAGAGTTCGCAGCTgtaagtggctttcttcctggataattccttcattctaattaaggccggaattgtcttgttacctgccatcggtcgttatcagcccttcacggttttataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT