1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCATTAATGAAGTAGAAGGTAATATCAGCAACCAGAATGCATCTCAATATATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgttgtgaattaatcatgtgttaaagtttaggtgaagcttatgtgcttaagtatcaccttaatgtaatgctgaatgtagtcaaagcagggatattatgtgattgcaaatgagtagtattcagtacaatttcttctctaactggccggttcctcattctttcag
species | Physcomitrella patens |
transcript | PP1S475_17V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAG ATATTGGTCATGATTTTGATACANAGAGATCTGCAAGATGTAGGCCGCEST: gi|100400047|gb|BY990752.1|BY990752
genomic: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgt ... attctttcagATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGTAGGCCGC
EST: TATACAAGCTACTGCATTTAAAGATGGGACGCTGGCAGAGAGACATGCAG ATATTGGTCATGATTTTGATACAAEST: gi|100374693|gb|BY949023.1|BY949023
genomic: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgt ... attctttcagATATTGGTCATGATTTTGATACAA
EST: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAG ATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGTNAGGCNGC-G
genomic: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgt ... attctttcagATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGT-AGGCCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCATTAATGAAGTAGAAGGTAATATCAGCAACCAGAATGCATCTCAATATATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgttgtgaattaatcatgtgttaaagtttaggtgaagcttatgtgcttaagtatcaccttaatgtaatgctgaatgtagtcaaagcagggatattatgtgattgcaaatgagtagtattcagtacaatttcttctctaactggccggttcctcattctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG