1 5' 3' | 2 5' 3' | 3 5' 3' |
GTACAAGGAAATGGACACGTTGTACCCGTGCTTTGGGAAGCTACACAATATTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAGgtacgatctcatcttagtcgcgaccctctagagtgctgtgtagtttatatgtgccacgatgaatcccaattattgtgcatgttcgtgttcatagtttcgg...
species | Physcomitrella patens |
transcript | PP1S474_4V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTTCTGTGAG GCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCEST: gi|162275769|gb|FC451940.1|FC451940
genomic: CCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
EST: TGTTAGAAAGGCCTTCTGTGAG GCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCEST: gi|100414467|gb|BY992788.1|BY992788
genomic: TGTTAGAAAGGCCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
EST: TTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAG GCTGGTTATGATTACACCGACNAAGAATTTGATGCTGTGTTTAAGCGCATCEST: gi|208373553|gb|DC941108.1|DC941108
genomic: TTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
EST: TTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAG GCTGGTTATGATTACACCGACAAAAAATTTGATGCTGTGTTTAAGCGCATC
genomic: TTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAGGAAATGGACACGTTGTACCCGTGCTTTGGGAAGCTACACAATATTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAGgtacgatctcatcttagtcgcgaccctctagagtgctgtgtagtttatatgtgccacgatgaatcccaattattgtgcatgttcgtgttcatagtttcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG