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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGACTGGACAGTTGTTCTCTCGCACAACGCAGGCCTTGTTTTATAACTACAAGCAGAGTCCGGTGCAGCGCATGCTTGATTTCGATTTCCTTTGCGgtatgtcatcgctctacactcagttctcgagcttatctcaacgttttagtcaagttcttaacttttacatcgccagagtaaaagatcagtccttgaatgg...

Basic information

species Physcomitrella patens
transcript PP1S46_63V6.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA09G04000.1 (Glycine max), 5'ss of exon 2
ATGGCGACTGGACAGTTGTTCTCTCGCACAACGCAGGCCTTGTTTTATAACTACAAGCAGAGTCCGGTGCAGCGCATGCTTGATTTCGATTTCCTTTGCGgtatgtcatcgctctaca--ctcagttctc----gagcttatctcaacgttttagtcaa-gttcttaacttttacatc--gccagagtaaaagatcagtccttgaatgg----
||||| || |||||  | ||||| || || || ||||| |||||||| |||||||||||   |||  | ||||| ||||||||||| || |||||||||||| |||    ||||||    ||  ||| ||      ||  ||  ||     | |  ||  |   ||||  ||| | |        | |  ||| ||     |||  |      
ATGGCAACCGGACAACTATTCTCGCGTACTACACAGGCTTTGTTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGCGgtttgtgccggctctatcgtcttcgttttcttctaggcggattacagaaaatgatacattgacattaatatttgcttttaatactaatggaagctctaattttgtgttcgcag

upper sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP06930 (Chlamydomonas reinhardtii), 5'ss of exon 1
ATGGCGACTGGACAGTTGTTCTCTCGCACAACGCAGGCCTTGTTTTATAACTACAAGCAGAGTCCGGTGCAGCGCATGCTTGATTTCGATTTCCTTTGCGgtatgtcatcgctctacactcagttctcgagcttatctcaacgttttagtcaagttcttaacttttacatcgccagagtaaaagatcagtccttgaatgg-------
||   |   || ||| | ||          ||||||||  | || |  ||||||||| |||  || |||||||||||||||||||| || ||| ||||||||| |   ||||||  |||   |  || ||| |           ||  ||  |   |  || |||      || ||||  |     |  | |       |       
ATCATGTTGGGCCAGCTCTTTAACAAGGAGACGCAGGCGATTTTCTTCAACTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctcgctc-gcacgt-gccctggagatg----------ttcggtagaacgcgcaattttgggcgagcgagagcgatctggcgcttcactggccgcgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347515|gb|BJ179562.1|BJ179562
EST:     CTACAAGCAGAGTCCGGTGCAGCGCATGCTTGATTTCNATTTCCTTTGCG                         GAAGGGAGACGCCATCTGTGGCTGGTGTGATCAACCCAGGATCTGATGGTT
genomic: CTACAAGCAGAGTCCGGTGCAGCGCATGCTTGATTTCGATTTCCTTTGCGgtatgtcatc ... gacgtcacagGAAGGGAGACGCCATCTGTGGCTGGTGTGATCAACCCAGGATCTGATGGTT