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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactccccttcctcattgatgtggaccccatcagcaattactaattgtttttcttcccgtcttgttcttgcatttatttcgacgctagtattgacccattggacctttggaccccgcag

Basic information

species Physcomitrella patens
transcript PP1S46_43V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100399060|gb|BY954179.1|BY954179
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|18352369|gb|BJ184423.1|BJ184423
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100402583|gb|BY954908.1|BY954908
EST:     GAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCTCGCNNNNNNNGC                         AATTTTGGGGAAACAGCAATTTTAC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTAC
EST: gi|18354936|gb|BJ186995.1|BJ186995
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|208349978|gb|DC913686.1|DC913686
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100390535|gb|BY952943.1|BY952943
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100418644|gb|BY957519.1|BY957519
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTTGGGGGACCAGCAATTTTTACCTGGCAGGGTTGAAAGCTAACATC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTT-GGGGAACCAGCAATTTT-ACCTGGCAGGGTTGAA-GCTAACATC
EST: gi|100438691|gb|BY961753.1|BY961753
EST:     AAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGNC                         A-TTTTGGGGAACCAGCAATTTTACCTGGCAGGGNTGAAGCTAACATCAC
genomic: AAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTG-Cgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCAC
EST: gi|208383042|gb|DC915314.1|DC915314
EST:     AAAATGACTCTAGCGACGTTTGGAA-CCTCAATATTCTCGCCTTTTTTGC                         ANTTT-GGGGAACNAGCANTTT-ACCTGGCAGGNT-GAA-CTA-CATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100412710|gb|BY974869.1|BY974869
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAAACAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|162185617|gb|FC362030.1|FC362030
EST:     GAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100425493|gb|BY958623.1|BY958623
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100417350|gb|BY957288.1|BY957288
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATCTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100370930|gb|BY968125.1|BY968125
EST:     AAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTCTCGCCTTTTTTGC                         NATTTTTGGGGAACCAGCAATTTTACCTGGGCAGGGT-GAAGCTAACATCA
genomic: AAATGACTCTAGCGACGTTTGGAAACC-TCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTT-GGGGAACCAGCAATTTTACCTGG-CAGGGTTGAAGCTAACATCA
EST: gi|100384686|gb|BY950676.1|BY950676
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|100413311|gb|BY956609.1|BY956609
EST:     AAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAATGACTCTAGCGACGTTTGGAAACC-TCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|18350799|gb|BJ182850.1|BJ182850
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTG
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTG
EST: gi|100420641|gb|BY993442.1|BY993442
EST:     AAAATGACTCTAGCGACGTTTGGAAACCCCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: gi|18351965|gb|BJ184017.1|BJ184017
EST:     AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC                         AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC