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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCGAAGGATTCAAAGGACGTGGAGCTATGGGAATCAAAGTCTACGGCATTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggctttttgatgggtcgtggatatgaatggagttatcaaatgtcattgttgagcagagcaaggaagtaggttgggtggttggaacaagggtctctc...

Basic information

species Physcomitrella patens
transcript PP1S46_325V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208349859|gb|DC905983.1|DC905983
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|208344704|gb|DC905153.1|DC905153
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|162269338|gb|FC444816.1|FC444816
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|208387810|gb|DC941379.1|DC941379
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|208379946|gb|DC927672.1|DC927672
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTCGAAGATTCTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|18357078|gb|BJ189137.1|BJ189137
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|162269339|gb|FC444817.1|FC444817
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: gi|208393393|gb|DC942491.1|DC942491
EST:     TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG                         GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC