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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGCAGCTCGAACGATGAGCTCAAAAAGTGTGCAAATGGCTAAAACTTTTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtcacaactgagtattatgtttttcaagcattaatttgccttctcacaattcctggtttacaattttgacttatcttcgtgaactcttggttt...

Basic information

species Physcomitrella patens
transcript PP1S46_248V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162249473|gb|FC426743.1|FC426743
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
EST: gi|67508684|gb|BJ941545.1|BJ941545
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
EST: gi|67578233|gb|BJ950400.1|BJ950400
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
EST: gi|67699765|gb|BJ959998.1|BJ959998
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
EST: gi|67701100|gb|BJ961333.1|BJ961333
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
EST: gi|67691910|gb|BJ952143.1|BJ952143
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
EST: gi|67578497|gb|BJ950664.1|BJ950664
EST:     TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAG                         GCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT
genomic: TTACTGTCATGGGTGCTATTTTCGCGGGAACTGAATGCGTGTTTGAGAAGgtagaatgtc ... tgttgtatagGCAAGAGCAAAACACGATGCTACAAATACAGTATTAGCTGGGTGTGCGACT