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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt...

Basic information

species Physcomitrella patens
transcript PP1S461_1V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g01560.1 (Oryza sativa), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt---------
||  | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| || || || ||||  |    ||||  ||  ||| || ||   ||| ||      |||   |  |||| |  ||   |     | |  |  ||   | |  ||||||         
GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTTgtaagtttgtcattcttg--tttacacttaactacacatgcttgaagcttatcttttttttttctgt--tacctgatagcttatatt-tctaattaccttttaccatag

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os05g30530.1 (Oryza sativa), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagt---tcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttatag---gtggcattctgtggaatgaatcgcccacctacctt
||  | |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| | ||||| || || || |||   |  ||   |   |  |   | |   |  | ||    |||| | || ||| ||  | |||    |||||    |   |  |||  |    ||      
GCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTTgtaagtacattgtatagccgcaagttatatcacgcagttcaaatgcattctgtataatgctaatgtagtgtttggcaaatgggaaagggaaatgatttcc------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctag----cccttgacttccc---acctatctctgc-atcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||  | || |||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || || || || |||||||    |    ||  |||  | |    |     |||||| ||   |   | ||        || |    ||  ||||   | | ||  | |    ||| ||  
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G158584_T02 (Zea mays), 5'ss of exon 5
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagt----------tcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatc-gcccacctacctt
||| | || |||||||||||  |||||||||||||||||||||||||||||||||| |||||| | || || || || || |||          | |||||  | |      ||    ||| | | ||| ||||| |  ||  | |     |||| |   | | |    |  ||| |   ||       
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaaaatattttctagctttggtacctacaatcttctgtacttccccatttgtctaatgcttc----aggttgttcttttttctgtagatctgtgtac-------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G176641_T01 (Zea mays), 5'ss of exon 4
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagt----------tcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatc-gcccacctacctt
||| | || |||||||||||  |||||||||||||||||||||||||||||||||| |||||| | || || || || || |||          | |||||  | |      ||    ||| | | ||| ||||| |  ||  | |     |||| |   | | |    |  ||| |   ||       
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgtctaatgcttc----aggttgttcttttttctgtagatctgtgtac-------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G469061_T01 (Zea mays), 5'ss of exon 3
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt--
||| | || |||||||||||  |||||||||||||||||||||||||||||||||| |||||| | ||||| || || || |||    |   |  |    |  |  ||    | |  ||     |  |||  ||   |  ||     ||| | |   || |   |     |||       
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTTgtaagtaaacatgtcggggac-cataattaggggtacccccaagactcctaatctcagctggtaacccccat-cagcacaaagctgcaaaggcctgatgggc

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G125271_T01 (Zea mays), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttg--acttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||| | || |||||||||||| |||||||||||||||| ||||||||||||||||| |||||| | || || || || || |||    |    |||   ||      || | | |   | |||  ||| |  |||  || | |   |||  || | || |                    
GCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTGGACAAGCTTGGCGGAGCTTTTgtaagtaaagaaattttgtagctctgtcactttttttttctactccatttgtctaatgtttctgtt--tggtcttttatgtag-------------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G035017_T01 (Zea mays), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||| | || |||||||||||  |||||||||||||||||||||||||||||||||| |||||| | || || || || || |||    |       | || | | ||   |  | | |  || | ||    |    ||  |  ||   ||  |   |  || |        ||     
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaa-----aattttctagct---ttggtacctacaatcttctgtacttcttcttttgtctgatgtttcaggttggactttttttctgtag-

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G542753_T01 (Zea mays), 5'ss of exon 6
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt--
||| | || | |||||||||  |||||||||||||||||||||||||||||||||| |||||| | || || || || || |||    |       | || | | ||   |  | | |  || | ||    |       ||  ||   || ||   |  ||  ||       | |  |  
GCTAGGGGATCGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaat-----attttctagct---ttggtacctacaatcttctgtacttccccatttgtctgatgcttcaggttgg-tctttttttttctgtag

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G301096_T01 (Zea mays), 5'ss of exon 3
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||| | || |||||||||||  ||||||||||||||||||||||||||||||||||  ||||| | ||  | || || || |||    |       | || | | ||   |  | | |  || | ||    |       ||  ||   || ||   |  ||          ||     
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCAACAAGCTTGGCAGAGCTTTTgtaagtaaacaat-----attttctagct---ttggtacctacaatcttctgtacttccccatttgtctgatgcttcaggttggtctttttttctgtag-

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G060986_T01 (Zea mays), 5'ss of exon 6
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt-
||| | || |||||||||||  ||||||||||||||| |||||||||||||||||| || ||| | ||  | || || ||||||    |    ||     |     || ||    ||| ||                                                          
GCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGTGCCCAAGCATTGGATGCTCGATAAGCTTGGCAGAGCTTTTgtgagtaaacaatattttctagctttggtacctaca-atcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G159228_T01 (Zea mays), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||| | || |||||||||||  ||||||| |||| ||| ||||||||||||||||| |||||| | || || || || || |||    |       | || | | ||   |  | | |  || | ||    |       ||  ||   || ||   |  ||          ||     
GCTAGGGGATTGAAGAAGCACTTGAAGAGCCTCAGTGCTCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaacaat-----attttctagct---ttggtacctacaatcttctgtacttccccatttgtctgatgcttcaggttggtctttttttctgtag-

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G43080.2 (Glycine max), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||| | || |||||||||||||| |||||||||||||| || ||||||||||||||||||||  |||||||||| || || |||        | | | |      | |  | || |   |  | |||||||  |   | ||  |   |||| |      || |  |            
GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaactttcatcattcttggtccagttttgaagtgtattattttaaagac---tgatgtgaaacatttt-catcctgtacag------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA16G23730.1 (Glycine max), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||  | || || |||||||||||||||||||| ||||| || ||||||||||||||||||||  |||||||||| || || |||    |   ||| |  |       |  | |  |   |   |||  || ||  || | | |      || | | |  |                  
GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaaatttctttatcttttgaaaagttttcaaggatgcatttcaaagat--ttatgtggacttttttttcttgtttag----------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G05370.1 (Glycine max), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagc-ccttgacttcccacctatctctgcatcctcattt---tttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||  | || |||||||||||| |||||||||| ||||| || ||||||||||||||||||||  |||||||||| || || |||        | ||  |||   | |  | |     |   |||||   |||||||  ||  ||||  |    | ||||  |                    
GCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaagttgctttatctttttaacagttttcaggtgtgcatttcattttaaaagactgatatatatttt-tcctgtttag-------------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA14G06170.1 (Glycine max), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||| | ||  | ||||||||| |||| ||||||||||| || ||||||||||||||||||||  |||||||||| || || |||    |     | | ||   | | |  | || |   |  | |||| ||  |   | ||  |   | || |      || || |            
GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaaatttaatcattttgtaaccagttttgaagggtattattttgaagac---tgatgtg-aacctttttcatcctgtatag------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA01G31270.1 (Glycine max), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacc-tatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
||  | || || ||||| || ||||||||||||||||| || || |||||||||||||||||| | ||||||||||| ||  || |    | |   | |  | |   |||   |  |  |  |||| ||   |   ||   | |    |||    |    ||    | |    ||    
GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTgtatgtacagtactcacaattgtcgatgatattattttactcaaatttatttgtaattttcatttgaactcatgtactcatttggcctggctctgtag---

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA03G06440.1 (Glycine max), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtg-gaatgaatcgcccacctacctt
||  | || |||||||| ||  |||||||||||||||| || || || ||||||||||||||| | ||||| ||||| ||  || |    | |     |    |      | |   || |  || |||  |||  |  | |      |||| ||   |  ||  | |            
GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTTgtatgtacagtactcacagttgttgatgatattatttgtcatttttatttgtaattttcgtttgaact-cattttgcctggctgtgtag------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt---------
||| | || |||||||| ||| |||||||||||||||| || ||||||||||||||||||||| | || ||||| || || |||   |      | |    |||   | | |||  |  |  |  | |    |  |  | |        |   |||   | | |   | |      ||         
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagc-ctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv13s0067g01820.t01 (Vitis vinifera), 5'ss of exon 1
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgactt-cccacctatctctgcatcctcattttttaaaatccttttataggtggcatt-ctgtggaatgaatcgcccacctacctt-----
      || |||||||||||| |||||||||||||||| || |||||||||||||| |||||| | || ||||| || || |||    |  |  |  ||    ||  | | |||     |||||||   |   |  | | | |      ||   ||  |  | |  |     ||||  |      
-----AGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCACCGAAGCATTGGATGCTAGACAAGCTTGGAGGTGCATTTgtaagtcaaaaatctgttcctgattcatatttttctatcgactcatttcacacccttatctcacatccaaaatcattgatggctcatccataatcctatttgtatag

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatcctt---ttataggtggcattctgtggaatgaatcgcccacctacctt----
|| || || || ||||| ||| |||||||||| ||||| || ||||||||||||||||||||  | || ||||| || || |||    |||  ||      |    | | ||     | | ||  | | | | |||    || ||  ||   | || |  ||||  |     | ||  | |    
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagctttt----ctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgcttt--aatgtcttata-atctgtcatacag

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ26570 (Selaginella moellendorffii), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagt---tcctagcccttgactt-cccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
|  || ||   ||||||||||||||||  ||||||||| |||||||||||||||||   |||| | || ||||||||||| |||   || |  || |||  || ||||  ||  || |    ||||          | |||||  ||                                   
GTGCGCGGGCCGAAGAAGCATCTGAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTCgtaagtctctcttcccctttgtttttcccaggtagatccgtgcgctcacggcg-gccttgcttttccag-----------------------------------

upper sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ14824 (Selaginella moellendorffii), 5'ss of exon 2
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagccc---ttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt
|  || ||   |||||||||||| |||  ||||||||| |||||||||||||||||   |||| | || |||||||| || |||  ||   ||   |||   |||||  ||  || |    ||||          | |||||  ||                                   
GTGCGCGGGCCGAAGAAGCATCTCAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTTgtaagtatctgttcccctttgttgtcccaggtagatccgtgcgctcacggcg-gccttgcttttccag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18373420|gb|BJ204998.1|BJ204998
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162259879|gb|FC436014.1|FC436014
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|22492080|gb|BU052003.1|BU052003
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|67569698|gb|BJ942522.1|BJ942522
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|18353813|gb|BJ185868.1|BJ185868
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|18351557|gb|BJ183609.1|BJ183609
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|208397549|gb|DC912167.1|DC912167
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162228344|gb|FC405216.1|FC405216
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162204462|gb|FC381690.1|FC381690
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162231579|gb|FC408211.1|FC408211
EST:     ATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: ATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162234371|gb|FC410117.1|FC410117
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|18331744|gb|BJ163755.1|BJ163755
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|67576478|gb|BJ949302.1|BJ949302
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|67573367|gb|BJ946191.1|BJ946191
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|67569443|gb|BJ942267.1|BJ942267
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|18355712|gb|BJ187771.1|BJ187771
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|18332043|gb|BJ164055.1|BJ164055
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162271080|gb|FC446614.1|FC446614
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|18357974|gb|BJ190033.1|BJ190033
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
EST: gi|162211721|gb|FC388009.1|FC388009
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC                         GCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 21

GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcct ... tttactttagGCCCCCAAGCCCTCTCCTGGACCCCACAAGGAGCGGGAATGTCTGCCATTGGTGGTTATGTTGAGGAACAGGCTGAAGTATGCATTGACCTACCGAGAAG




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