Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATCGACTTGAAGGCCGGGGGCCGCAACAAGAAGACCAAGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaaagaagcacttcccatttatctgttgttttgcagaggacgtggatttctcggagtctgatttgagataagggtttccaacgtggtttggggtgatcgtgttactgattgggccagtgtttttcccctaaattttctaacgttataatgtctcctttcag

Basic information

species Physcomitrella patens
transcript PP1S45_191V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S45_191V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ22685 (Selaginella moellendorffii), 5'ss of exon 2
GGTATCGACTTGAAGGCCGGGGGCCGCAACAAGAAGACCAAGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaaagaa----gcacttcccatttatctgttgttttgcagaggacgtggatttctcggagtctgatttgagataagggtttccaacgtggtttggggtgatcgtgttactgattgggccagtgtttttcccctaaattttctaacgttataatgtctcctttcag
||||||||| |  | ||||| || |||||||||||||||||||| || || |||||||||| |||||| || || ||||| || || ||||||| |     | |    ||| |     | || | ||||           |||    ||  |     |    | |  |  |                                                                                           
GGTATCGACATCGAAGCCGGCGGGCGCAACAAGAAGACCAAGCGGACAGCCCCCAAGAGTGACAATGTCTACCTCAAGCTGCTCGTCAAGgtgagtgcgtgggatttggcattggatctatagcggttgcccgatttctcacgcattttcttttccattccctctctgtcag------------------------------------------------------------------------------------------

upper sequence: PP1S45_191V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ13065 (Selaginella moellendorffii), 5'ss of exon 2
GGTATCGACTTGAAGGCCGGGGGCCGCAACAAGAAGACCAAGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaaagaagcacttcccatttatctgttgttttgcagaggacgtg-gatttctcg-gagtctgatttgagataagggtttccaacgtggtttggggtgatcgtgttactgattgggccagtgtttttcccctaaattttctaacgttataatgtctcctttcag
||||||||| |  | ||||| || |||||||||||||||||||| || || |||||||||| |||||| || || ||||| || || ||||||| |     | |          |||  |  | | | |  || ||  | | ||||||||  |  | |  |||   ||      |  |   |                                                                              
GGTATCGACATCGAAGCCGGCGGGCGCAACAAGAAGACCAAGCGGACAGCCCCCAAGAGTGACAATGTCTACCTCAAGCTGCTCGTCAAGgtgagtgcgtggga----------tttggcattggatctagagcggttgcgcgatttctcacgcattttcttttccatttcctctctcgcag------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162231634|gb|FC408240.1|FC408240
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162207643|gb|FC383520.1|FC383520
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162227049|gb|FC403380.1|FC403380
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162260037|gb|FC435756.1|FC435756
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67709913|gb|BJ965729.1|BJ965729
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|19781650|gb|BQ039752.1|BQ039752
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67725608|gb|BJ975867.1|BJ975867
EST:     AGCGTACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162260038|gb|FC435757.1|FC435757
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67723992|gb|BJ974251.1|BJ974251
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162279057|gb|FC455084.1|FC455084
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67717658|gb|BJ967917.1|BJ967917
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162279058|gb|FC455085.1|FC455085
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67692061|gb|BJ952294.1|BJ952294
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67719947|gb|BJ970206.1|BJ970206
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162231635|gb|FC408241.1|FC408241
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67568856|gb|BJ941680.1|BJ941680
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162215643|gb|FC391696.1|FC391696
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162264466|gb|FC440827.1|FC440827
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67701067|gb|BJ961300.1|BJ961300
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162276829|gb|FC452511.1|FC452511
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162218511|gb|FC395088.1|FC395088
EST:     TAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: TAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162266437|gb|FC442473.1|FC442473
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67726170|gb|BJ976429.1|BJ976429
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67578200|gb|BJ950367.1|BJ950367
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162238564|gb|FC418147.1|FC418147
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|19779480|gb|BQ039439.1|BQ039439
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67717087|gb|BJ967346.1|BJ967346
EST:     AGCGTACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|18330423|gb|BJ162429.1|BJ162429
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|19790212|gb|BQ041756.1|BQ041756
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67575557|gb|BJ948381.1|BJ948381
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67699032|gb|BJ959265.1|BJ959265
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162235000|gb|FC411787.1|FC411787
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162230338|gb|FC406902.1|FC406902
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162276990|gb|FC453088.1|FC453088
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|18338242|gb|BJ170266.1|BJ170266
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67575608|gb|BJ948432.1|BJ948432
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162219003|gb|FC394910.1|FC394910
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|67699084|gb|BJ959317.1|BJ959317
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
EST: gi|162276830|gb|FC452512.1|FC452512
EST:     AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAG                         TTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG
genomic: AGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 83

GGTATCGACTTGAAGGCCGGGGGCCGCAACAAGAAGACCAAGCGCACCGCGCCCAAGAGTGGCAATGTTTATCTAAAGCTCCTTGTGAAGgtgattttaa ... ctcctttcagTTGTACCGGTTTTTGGTTAGAAGAACGGACGCTCCATTCAATGCAGTCGTGCTGAAGCGGCTGTTTATGAGCCGTATCAACCGACCTCCTATCTCCATGT




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