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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca...

Basic information

species Physcomitrella patens
transcript PP1S459_9V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt-gcttttctgtga--agttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca
|| ||||| |||||||| || || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  ||||  ||  | | | |  || ||    | |  |  |||||    ||  | | || | ||      |    | || ||     |||    | ||||     |  
CACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtaaagtgattgatctcttgcgatctatctaatgattatgtgaatga-atgagcatgttagcttcctacttgctcgtgagattgtgctgtgtaacatatgc--

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgta--ttgtcgtgcttttctgtgaagttttgtttttatgacggtggt-acgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca
|| ||||| || |||||||| || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  |||    |  |  || |  || |   |  |   | |  |  |  | |  ||  |   |   ||      | ||  ||   ||    | |   || |||   |  
CACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccctggcctccctatcgcgcatgactatgttagcaattgccactagtactgcatgtgcttgaatttatga--attaaatacggttatctccttct-

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca-
|| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  ||||   ||        | ||    | || |     |  |     ||       |  ||| |   ||  |  |||       ||   ||  |  |    || 
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctt-tcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagtt--cttgtccatgtgtttcttataactcgaacca-----
|| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  |||      | |||  || |  |  ||||    |    ||     | || | | || ||| |    |  |  ||  |  |   ||  ||| |    |  |        
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgt------gagctcatc-gccattttttagcctacctacaacatttcgcgtgcttgttgaattcaaactagctaataaacaggtcacttgtcctgcccattgcaatt

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttt-tttggaacacagttcttgtccatgtgtttcttataactcgaacca
|| ||||| || ||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  |||    || |   |   |      |||     ||   |   || | || || |   ||    ||  |||| ||  |     ||||   ||  |  | |   
CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaata-tgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttg-----tttttatgacggtggtacgggcgttttttggaacacagtt---cttgtccatgtgtttcttataactcgaacca----------------------------
||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| ||||| ||||  |||||| |   ||||| | |      |||   ||   |||||     | ||  | |     ||    |  |||| ||| | | || |   ||||     || ||     ||  |  ||                               
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgta--ttgtcgtgcttttctgt------gaagttttgtttttatgacggtggtacgggcgttttttggaac-----acagttcttgtccatgt-----gtttcttataactc---gaacca----------------------
||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| ||||| ||||  || ||| ||  |||||  ||  | |  |||  |||      |||  ||| |  | || || ||| ||      | | ||  ||      |||| |    |   | |     ||| ||| ||| ||   |||                         
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 5'ss of exon 2
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaac-ca-
|| |||||||| |||||||| ||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||  | || |  ||||||||||  ||| | || ||  |  | |    | || || | || | |   || | ||       |||  |  ||| |   | |   | |  || |  ||  | | || || 
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgt-tagtagtagtaatgtcaacacttctgatattgtca---tgtttcgttttaagtttacactacaatctctttgggtcttattatgttatgttgtacacag

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca---
|||||||||||  | || || || |||||||||||| |||||||||||||||| | ||| ||||||||||| || || ||||| |   ||||||||   ||||| | | |  | |  | |    |    | |  ||  |  ||  |  |    ||| |  | ||  ||   | |  |||   |    ||||            
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgtatgggctttttctcttctaggttaacttgtccatttct-tgtcattgag--tttctataccattgtggatttgaatggagtaggcataaaatttgtgggtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265436|gb|FC440762.1|FC440762
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|67727928|gb|BJ978187.1|BJ978187
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162229259|gb|FC405346.1|FC405346
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162215362|gb|FC391858.1|FC391858
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|208395785|gb|DC920291.1|DC920291
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18336214|gb|BJ168236.1|BJ168236
EST:     TGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|37851300|gb|BJ609308.1|BJ609308
EST:     GTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCT
genomic: GTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGG-AAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACC-
EST: gi|18370466|gb|BJ202068.1|BJ202068
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|37853583|gb|BJ611591.1|BJ611591
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|67694980|gb|BJ955213.1|BJ955213
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18326513|gb|BJ158512.1|BJ158512
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18334570|gb|BJ166587.1|BJ166587
EST:     TCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|208356746|gb|DC906408.1|DC906408
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162259518|gb|FC435445.1|FC435445
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162275611|gb|FC451327.1|FC451327
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|208366490|gb|DC954826.1|DC954826
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162274140|gb|FC450212.1|FC450212
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|37844223|gb|BJ602231.1|BJ602231
EST:     GTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGN                         CCCGCCAGAGGAAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCT
genomic: GTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGG-AAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCT
EST: gi|162215361|gb|FC391857.1|FC391857
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18326626|gb|BJ158625.1|BJ158625
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18326583|gb|BJ158582.1|BJ158582
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18373736|gb|BJ205314.1|BJ205314
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162229258|gb|FC405345.1|FC405345
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|67571629|gb|BJ944453.1|BJ944453
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162204085|gb|FC379454.1|FC379454
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|19779128|gb|BQ039406.1|BQ039406
EST:     TTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|67719664|gb|BJ969923.1|BJ969923
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18368398|gb|BJ200483.1|BJ200483
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|67573107|gb|BJ945931.1|BJ945931
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18352513|gb|BJ184567.1|BJ184567
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18360219|gb|BJ192281.1|BJ192281
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18327983|gb|BJ159987.1|BJ159987
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162225650|gb|FC401792.1|FC401792
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTTTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|37833943|gb|BJ591955.1|BJ591955
EST:     TGTGAGGACNTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162272674|gb|FC448300.1|FC448300
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|208347049|gb|DC909347.1|DC909347
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|18334613|gb|BJ166630.1|BJ166630
EST:     GTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: GTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162274139|gb|FC450211.1|FC450211
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|208382584|gb|DC923212.1|DC923212
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|162272675|gb|FC448301.1|FC448301
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
EST: gi|208391982|gb|DC941830.1|DC941830
EST:     TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGG                         CCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT
genomic: TGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgt ... gtatgtgcagCCCGCCAGAGGAAAGCCGTTGCCGTCTTTCCCCGACCAACTGCTGGACCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttttttggaacacagttcttgtccatgtgtttcttataactcgaacca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC