1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTATGGATATGACAAAGGTGACATTGGCAAGCTGTTTATTGCTGGATTTGGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATAgtaagtatttattttaccttcgccttttcatcagggaaaaatatttcaatcttttaaaaaaatgaatcaggtatttattcaacgtacttaatcttcacct...
species | Physcomitrella patens |
transcript | PP1S44_143V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATA TGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTGEST: gi|67508186|gb|BJ941057.1|BJ941057
genomic: GGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATAgtaagtattt ... tcttttgtagTGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTG
EST: GGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATA TGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTGEST: gi|162186751|gb|FC362787.1|FC362787
genomic: GGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATAgtaagtattt ... tcttttgtagTGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTG
EST: GTTTCCTCA-TGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATA TGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTGEST: gi|18351372|gb|BJ183424.1|BJ183424
genomic: GTT-CCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATAgtaagtattt ... tcttttgtagTGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTG
EST: GGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATA TGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTG
genomic: GGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATAgtaagtattt ... tcttttgtagTGGACGCAAGAGGATGAGTGTCATCTACTGTATTACATACATGCTGAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATGGATATGACAAAGGTGACATTGGCAAGCTGTTTATTGCTGGATTTGGTTCCTCAATGCTTTTTGGAACCATTGTGGGATCACTTGCGGATAGATAgtaagtatttattttaccttcgccttttcatcagggaaaaatatttcaatcttttaaaaaaatgaatcaggtatttattcaacgtacttaatcttcacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaaa