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GGAATGGGAGGAGCAGCCATGTACGAGTTGGTCCGTGTAGGACACGATAAGCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaagctttcagtcgatggaatttttggaatgaacggattagttagtccaagcacatttctttctccattaagtcttcgttgttttatcggcgt...
species | Physcomitrella patens |
transcript | PP1S44_102V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAG TCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACACEST: gi|18366222|gb|BJ198300.1|BJ198300
genomic: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaa ... tattgtgcagTCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACAC
EST: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAG TCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACACEST: gi|18342968|gb|BJ175004.1|BJ175004
genomic: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaa ... tattgtgcagTCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACAC
EST: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAG TCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACACEST: gi|18367609|gb|BJ199692.1|BJ199692
genomic: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaa ... tattgtgcagTCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACAC
EST: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAG TCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACACEST: gi|18353514|gb|BJ185569.1|BJ185569
genomic: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaa ... tattgtgcagTCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACAC
EST: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAG TCTACGAAGAGEST: gi|162179503|gb|FC356543.1|FC356543
genomic: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaa ... tattgtgcagTCTACGAAGAG
EST: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAG TCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACAC
genomic: GCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaa ... tattgtgcagTCTACGAAGAGACAGCAGGCTTGATGGTCAATGATCCGGTTTTAAGGACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGGGAGGAGCAGCCATGTACGAGTTGGTCCGTGTAGGACACGATAAGCTGATTGGAGAGATTATTCGTCTTGAGGGTGATTCAGCTACCATTCAAGgtgcggagaagctttcagtcgatggaatttttggaatgaacggattagttagtccaagcacatttctttctccattaagtcttcgttgttttatcggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT