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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGGAGGTCTGGAAATTGTTTCCAGGTTAACAAGGTTGATCCCTTTCCAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatcttggaatcttctttctttgtcgccacagcactatgttcttgatacggtgtcacttcagtcgtcaaggtgtgtcgagttatatcgcatctgg...

Basic information

species Physcomitrella patens
transcript PP1S43_170V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164338|gb|FC341516.1|FC341516
EST:     ACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: ACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18350697|gb|BJ182748.1|BJ182748
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|162171558|gb|FC347499.1|FC347499
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18342914|gb|BJ174950.1|BJ174950
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18355637|gb|BJ187696.1|BJ187696
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|162169959|gb|FC345899.1|FC345899
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|208364567|gb|DC935352.1|DC935352
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTANGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18349385|gb|BJ181434.1|BJ181434
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|162156233|gb|FC332049.1|FC332049
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18342843|gb|BJ174879.1|BJ174879
EST:     CAGGATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTT-AGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTGGGAGGTCTGGAAATTGTTTCCAGGTTAACAAGGTTGATCCCTTTCCAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatcttggaatcttctttctttgtcgccacagcactatgttcttgatacggtgtcacttcagtcgtcaaggtgtgtcgagttatatcgcatctgg

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