Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCGCAGCTCTACGACAATGGCACGCCTGTGCCATTTGTTGATGAATTGTTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGAgtgcgcgcctacgttttacttctttcaaaagttttctgttatcggattgtctggatcctgatcctagctttattttaatatcgggaattaatgcattgta...

Basic information

species Physcomitrella patens
transcript PP1S42_19V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18349564|gb|BJ181614.1|BJ181614
EST:     TTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGA                         GGCTCCTGGAAGTAAAGTTTCAGGAAGGGGAGCAGCTTATTTGTCGAACTA
genomic: TTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGAgtgcgcgcct ... gtaaatgcagGGCTCCTGGAAGTAAAGTTTCAGGAAGGGGAGCAGCTTATTTGTCGAACTA
EST: gi|162235107|gb|FC412048.1|FC412048
EST:     TTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGA                         GGCTCCTGGAAGTAAAGTTTCAGG
genomic: TTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGAgtgcgcgcct ... gtaaatgcagGGCTCCTGGAAGTAAAGTTTCAGG
EST: gi|162199414|gb|FC374054.1|FC374054
EST:     TTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGA                         GGCTCCTGGAAGTAAAGTTTCAGGAAGGGGAGCAGCTTATTTGTCGAACTA
genomic: TTTGTACTGCGGCGAGACGCTGTGAATTTCGAAGTCGACAAAGTTGCAGAgtgcgcgcct ... gtaaatgcagGGCTCCTGGAAGTAAAGTTTCAGGAAGGGGAGCAGCTTATTTGTCGAACTA