1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGTCATACACAGGATCACATTATGGCAGAACGGAAGCGGCGGGAGAAGCTTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctctggacaaggtcgtaccacgctggtctttacgagtatagaaagctttaagtttagaagtttgagtggagtttaaccaccgtgtcatatattgtacgtgactcgtgacag
species | Physcomitrella patens |
transcript | PP1S42_136V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAA ATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTGEST: gi|162151216|gb|FC327696.1|FC327696
genomic: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctc ... ctcgtgacagATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTG
EST: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAA ATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTGEST: gi|162168094|gb|FC343784.1|FC343784
genomic: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctc ... ctcgtgacagATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTG
EST: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAA ATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTGEST: gi|162212951|gb|FC389167.1|FC389167
genomic: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctc ... ctcgtgacagATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTG
EST: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAA ATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTGEST: gi|162169303|gb|FC345465.1|FC345465
genomic: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctc ... ctcgtgacagATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTG
EST: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAA ATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTG
genomic: TTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctc ... ctcgtgacagATGGATAAAGCCTCTGTGCTGGGAGATGCAATCAAGTATGTAAAGACATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTCATACACAGGATCACATTATGGCAGAACGGAAGCGGCGGGAGAAGCTTAGCCAACGCTTCATTGCTCTTTCTGCGATTGTTCCCGGCTTGAAGAAAgtaagtcctctggacaaggtcgtaccacgctggtctttacgagtatagaaagctttaagtttagaagtttgagtggagtttaaccaccgtgtcatatattgtacgtgactcgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA