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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag

Basic information

species Physcomitrella patens
transcript PP1S427_1V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g21660.1 (Oryza sativa), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || || |||||||||||||| || || ||||| |||||||| ||||| |||||| ||| | |||| |||||||| ||||| || ||  | ||||||||||| |||| ||   | |    ||   |  | ||| |  || |   |||  | ||   ||   || | | | ||   |   |   |   |  |   | ||                                                                                            
TCAAAAGGATAAGCGTTTCAGTGGTTCTGTTAAGCTGCCCCACATCCCTCGGCCTAAGTTGAAGGTTTGCATGCTTGGTGATGCTCAGCACGTCGAAGAGgtatg-ttatgcttctactgattttgcattgacttggttttgatatgagatgtggagagaacttttatcgcaattgg-gtagttactactacgtatttagca-------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatg-gtgccagaaattg-aataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || || |||||||||||||| || || ||| | || ||||| || || |||||||||| | | || |||||||| |||||||| ||| ||||||||||||   || |||   ||     ||   || | ||  |  ||      | | ||||   |  |  | |  | |||| | || |  |  |||    | |  ||                                                                                             
TCAAAAGGATAAGCGTTTCAGTGGATCTGTTAAGTTGCCTCACATCCCCCGCCCTAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCATGTTGAAGAGgtat-tgtactcttttatcagttttgcatcaacttccttgtgtacataacagattgtgctttagtaatagaaaattgt-tgataggcttctacaatgaaggg---------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 2
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattct--ttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || |||||||||||||| |||||||| ||||| ||||| || || || || ||||||| | | || |||||||| |||||||| ||| | || |||||| | ||||  |   ||    ||| |  || | |   ||  |    ||     ||  ||  || |||| || ||||||   |||    ||||| | | || ||                                                                                           
GCAAAAGGACAAGCGTTTCAGCGGCTCCGTCAAGCTGCCCCATATCCCCCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCCCAGCATGTCGAGGAGgtaagattatgatgccatacccattttgattttgtaaatttgtacaccctccgtttagattgaa-attg-aggattttcctttctca--ctcatgtaagtgacc-------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g44380.2 (Oryza sativa), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || |||||||||||||| |||||||| ||||| ||||| || || || || ||||||| | | || |||||||| |||||||| ||| | || |||||| | |        |  ||  |  | || | |||  |   |     | |  ||  ||     ||||||| |||||||    | |  | ||| |     |  ||  |  ||||                                                                                
ACAAAAGGACAAGCGTTTCAGCGGCTCCGTTAAGCTGCCCCATATCCCCCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCCCAGCATGTCGAGGAGgtaagata-----tgatgttgtagccattttgtttaattcagactttacaggttacat----tattgtagtattttctcaatttgaacacatgt----agtgttactgaatta--------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G144387_T01 (Zea mays), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattc----------tttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 ||||| |||||||||||||||||||| || ||| | ||||| || |||||||| ||||||| | | || |||||||| |||||||| ||| |||| |||||| ||      | |   | || |||          ||| | | ||||||   ||| |    |||  |  |||  || | ||    | |   |  |  | ||                                                                                                     
ACAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCCCATATCCCTCGTCCCAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCATGTTGAGGAGgtaagcaagcattgatggtctgcttcaacatgcacttttttgtatgttgaacatgctaatggttg--ttgaac--tgaaaaaacaccagtgttttgaattattc---------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G181194_T01 (Zea mays), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgc------ttattctcaaattt-----tgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || |||||||||||||||||||| || ||| | || ||||| |||||||| ||||||| | | || |||||||| |||||||| ||  |||| ||||||  |      ||  |     | ||     ||    | | ||| ||||||   |||  | | |  | |||| |     | |      ||||  | ||  |                                                                                                       
ACAAAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATCCCTCGTCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCACGTTGAGGAGgtaaacaggcagttgatgatgcacttgaaaatgtacttatttatatgttgaacatgcttgcagt--agtaaatctgcaaaaacaccaatgcttcgagttact------------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G862017_T01 (Zea mays), 5'ss of exon 9
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgct------------tattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || ||||||||||||||||||||  | ||| | || ||||| |||||||| ||||||| | | || |||||||| |||||||||||  |||| ||||||  |             |   ||  ||   ||    | | ||| ||||||   |||  | | |  | |||| |     | |   |  ||||  | ||  |                                                                                                       
ACAAAAGGACAAGCGTTTCAGTGGCTCTATTAAGTTGCCTCACATCCCTCGTCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAACACGTTGAGGAGgtaaacaggcagttgatgatgcacttgaaaaatgtacttatttatatgttgaacatgcttgcagt--agtaaatctgcaaaaacactaatgcttcgagttac-------------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G170561_T01 (Zea mays), 5'ss of exon 4
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgc------ttattctcaaattt-----tgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaat-tttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || ||||||||||||||||||||  ||||| | || ||||| |||| ||| ||||||| | | || |||||||| |||||||| ||  |||| ||||||  |      ||  |     | ||     ||    | | ||| ||||||   |||  | | |  | |||| |  || | ||      ||||  | ||  |                                                                                                       
ACAAAAGGACAAGCGTTTCAGTGGCTCTATGAAGTTGCCTCACATCCCTCATCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCACGTTGAGGAGgtaaacaggcagttgatgatgcacttgaaaatgtacttatttatatgttgaacatgcttgcagt--agtaaatc--tgcaaaacaccaatgcttcgagttactc-----------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA12G31040.2 (Glycine max), 5'ss of exon 2
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
|||||| ||||||||||| |||||||| || ||| | || ||||||||||| || ||||||| |||||||||||||||||||||||||||  |||||||||||      |  || |||| | |  |  |     |||    | |      |||||  |  || | | ||    |||     ||| || |    ||  |  | ||| ||                                                                                     
CCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGgtaataagctgatctaattatcaaaccct-----tgtgcgagattttc--aattgggtgcaataatatattgctttacagactgtgttt-gcttcctttccatttata-------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA04G32330.1 (Glycine max), 5'ss of exon 1
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 ||||| ||||||||||| |||||||| || ||| | |  ||||||||| | || ||||||| |||||||||||||||||||||||||||| |||||||||||      |  || |||| | |  |  |     |||   ||        |||||  |  || | | ||    |||     ||| || |    ||  |  | ||| ||                                                                                     
TCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGgtaataagctgatctaattatcaaaccct-----tgt--gtgagattttcaattgggtgcaataatatattgctttgctgactgtgttt-gcttctttttcatttata-------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtag--aattttctgctctgggt--ctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 ||||| ||||||||||||||||||||||| ||| | |||||||| ||||| || |||||||  ||||| |||||||| ||||| || ||| |||||||||||| || |||  |        |||| |   |  | || ||| |||||    || ||| |     |||||  ||    |   | |  |    | | |||| ||   | |                                                                                        
ACAGAAGGACAAGCGTTTCAGTGGCTCCGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtat-ctaatttgc-----cctattcatcgaaactctttatgttgcca----tttaattaggtgctgtagggaacccccaagtttaagaaattaacctcattgttatctt---------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA13G39270.2 (Glycine max), 5'ss of exon 2
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
|||||| |||||||||||||||||||| || ||| | || || |||||||| || ||||||| |||||||||||||||||||||||| ||  |||| ||||||    || | |    | | ||      | |  | |  || |||      ||||         ||     || || | |  | | |  || ||    |   | ||  ||                                                                                   
CCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCATATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCACGTTGAGGAGgtaacaataatttatgctgtagagaaccacgagat-tcaatcgtgtgcttcattg-------ttttcctagatattttacattagataacacctgg--gatgtatgctta-----------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G02970.1 (Glycine max), 5'ss of exon 1
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 ||||| |||||||||||||||||||| || ||||| |||||||| ||||| || |||||||  ||||| |||||||| ||||| || ||| ||||||||||                 |  |||     ||||  |  |   |   |   ||| |   ||  |||  |  ||  |  ||||      | ||  ||      ||| ||   |||| |||                                                                          
ACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgt----------------ctctatttgccatattcatcaagactcttatggattcat--aactatttcatgataattagctcc----ttgattgcatgttgatttttacggtaaagctatgt-----------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA19G37980.1 (Glycine max), 5'ss of exon 2
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 |||||||| |||||||||||||| || || |||||||| || |||||||| ||||||||||  || || ||||| || ||||| || ||  ||||||||||     ||||||   |  |  | | | | |||   || |   |   |   ||   | |      | |  |||    |  | |   ||   | | | |                                                                                               
TCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGgttca--tattcttctaactataatatatatatgcctttactataatattcatgcgacagttttgtttcaaatggatttttttaattcaagtttaaattttt-------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT2G27530.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattga-ataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || || |||||||||||||| || |||||||| || || |||||||| || || |||| ||| ||||||||||||||||| || ||| |||| |||||      | |||| |   ||  |   |    | | | | | |     |  ||||| | |||   || |    |||  |    | |                                                                                                            
ACAAAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAAGATCTGTATGCTTGGAGATGCTCAGCATGTTGAGGAGgtgattgaaatctctatactttttgtgtatcttgtttggtttgaattggtgattgacacaaagtgtt-tgatgtttgttttgatag------------------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgt---atgcttattctcaaattttgat--tctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 || || ||||||||||||||||| || || ||| | || || || || |||||||| |||| ||| || ||||| ||||||||||| ||| ||||||||||   ||   | |||    |  |||||  | ||    | ||||  | ||   |    ||       |  |  |    |      || |  || |||| | |                                                                                                 
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggct--ctattagtttcatttgat------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0007g03340.t01 (Vitis vinifera), 5'ss of exon 3
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
||| || ||||||||||| ||||| || |||||||| || ||||| |||||||||||||||| ||| || |||||||| ||||| || ||| | |||||||||   ||| |      |||||| |  |   |    |   ||    || ||    |||||||  |  |     ||||| || |   | |    ||  ||   ||  | |                                                                                    
CCAAAAGGACAAGCGTTTTAGTGGGTCTGTGAAGCTGCCACACATCCCTCGTCCTAAGATGAAGATCTGCATGCTTGGTGATGCTCAGCATGTGGAAGAGgtaaa-ttact-----gttttgacttatctaacaaataactgagaacaaaac---aataaaaattgattttgatttctcctatcattttttaatccttgattttcctgt------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
|||||| ||||||||||||||||| || |||||| | |||||||| ||||| || ||||||| | | || |||||||| ||||| |||||  | |||||||||   || | ||| |   |||  |           || ||||    | ||   |   || |||  ||   |||      |   |      | |||      ||| | | ||||                                                                               
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaa--ttgtgctcca--cttggctgc--------attaatggcaataaaagaagtgaaagacaa-gtgtcattgctaattgaagaatatttttcaactatttttttgt-ttaa-------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ31249 (Selaginella moellendorffii), 5'ss of exon 2
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 ||||| |||||||||||||| ||||| |||||||| || |||||| | || || ||||||||  | || ||||| || ||||| || ||| | |  |||||| | ||   | |          ||| ||  || ||||  ||        ||||||| |    |       |||| ||| | |                                                                                                             
GCAGAAGGACAAGCGTTTCAGCGGCTCGGTGAAGCTGCCTCACATTGCGCGGCCCAAGATGAGAGTGTGCATGCTCGGTGATGCGCAGCATGTAGGCGAGgtaagattgagcgcc--------ctctctcctttagttgccgg--------attgaatcactggtccattgcttttttgcacag-------------------------------------------------------------------------------------------------------------

upper sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ34353 (Selaginella moellendorffii), 5'ss of exon 2
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacatt-gtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag
 ||||| |||||||||||||| ||||| |||||||| || |||||| | || || ||||||||  | || ||||| || ||||| || ||| | |  |||||| | ||   | |          | | ||  |||||||  ||        ||||||| |    |  || |  |||| ||| | |                                                                                                             
GCAGAAGGACAAGCGTTTCAGCGGCTCGGTGAAGCTGCCTCACATTGCCCGGCCCAAGATGAGAGTGTGCATGCTCGGTGATGCGCAGCATGTAGGGGAGgtaagattgagcgcc--------ctgtctccttttgttgccgg--------attgaatcactggtccgttgctttttttgcacag-------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162232132|gb|FC408020.1|FC408020
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18359329|gb|BJ191390.1|BJ191390
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18358554|gb|BJ190613.1|BJ190613
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162244469|gb|FC422642.1|FC422642
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18326115|gb|BJ158114.1|BJ158114
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162235347|gb|FC412314.1|FC412314
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162269332|gb|FC444810.1|FC444810
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|37850443|gb|BJ608451.1|BJ608451
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162215652|gb|FC391393.1|FC391393
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162277841|gb|FC454304.1|FC454304
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162232131|gb|FC408019.1|FC408019
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162276892|gb|FC452574.1|FC452574
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162279040|gb|FC455067.1|FC455067
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162244468|gb|FC422641.1|FC422641
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162277840|gb|FC454303.1|FC454303
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162269333|gb|FC444811.1|FC444811
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|7648161|gb|AW739144.1|AW739144
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18324727|gb|BJ156722.1|BJ156722
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|67578110|gb|BJ950277.1|BJ950277
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18345081|gb|BJ177122.1|BJ177122
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18369144|gb|BJ201229.1|BJ201229
EST:     GTCCTAANATGANGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162245737|gb|FC420755.1|FC420755
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162232602|gb|FC409153.1|FC409153
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|100387158|gb|BY951557.1|BY951557
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCTAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162215653|gb|FC391394.1|FC391394
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|67699736|gb|BJ959969.1|BJ959969
EST:     TCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: TCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162232603|gb|FC409154.1|FC409154
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162263628|gb|FC439605.1|FC439605
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18353418|gb|BJ185473.1|BJ185473
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|37834893|gb|BJ592905.1|BJ592905
EST:     GTCTTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|37852738|gb|BJ610746.1|BJ610746
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18343492|gb|BJ175530.1|BJ175530
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18351827|gb|BJ183879.1|BJ183879
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18349301|gb|BJ181350.1|BJ181350
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|67700974|gb|BJ961207.1|BJ961207
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162263627|gb|FC439604.1|FC439604
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162279039|gb|FC455066.1|FC455066
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|18372106|gb|BJ203708.1|BJ203708
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|37834865|gb|BJ592877.1|BJ592877
EST:     GTATGCTCGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTNGAAGAAGATG
genomic: GTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|19790349|gb|BQ041825.1|BQ041825
EST:     ATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: ATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|162245736|gb|FC420754.1|FC420754
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
EST: gi|37828244|gb|BJ586256.1|BJ586256
EST:     GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAG                         GCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 27

CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttat ... ctcgtcacagGCGACCAAGAATGGTATCGAGTGCATGGATGTCGAGAGCTTGAAGAAGATGAACAAGAACAAGAAACTTGTGAAGAAGCTGGCTAAGAAGTACCACGCTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA