1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACTGGGAACAGCGCTATCAAGCAGCTGCAAAGTGAGGTTAAGTTGGAGGATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgttacttggagacttctccgttctgaatttgtgatcatcattatgaagaacatggtagctttgtgtttcgtttctaaaaccgtgaccatttcta...
species | Physcomitrella patens |
transcript | PP1S426_21V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|100385426|gb|BY969763.1|BY969763
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAAACA-TTGTCTGCTGAAGATNNGAG-AGEST: gi|162163451|gb|FC339985.1|FC339985
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAA-CAATTGTCTGCTGAAGAT--GAGGAG
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|100353228|gb|BY945670.1|BY945670
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|100389690|gb|BY952496.1|BY952496
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|100388095|gb|BY988568.1|BY988568
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|208365967|gb|DC951168.1|DC951168
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|100400028|gb|BY990742.1|BY990742
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCTEST: gi|208389940|gb|DC937771.1|DC937771
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
EST: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAG GAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
genomic: ATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgtta ... tatggttcagGAATTAAACGCGGCATTAGGTGAACAATTGTCTGCTGAAGATGAGGAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGGGAACAGCGCTATCAAGCAGCTGCAAAGTGAGGTTAAGTTGGAGGATGTACAGAAGCTCATGGACGACACAGCGGAGGCGCAGGCCTACCAGGAGgtatgcgttacttggagacttctccgttctgaatttgtgatcatcattatgaagaacatggtagctttgtgtttcgtttctaaaaccgtgaccatttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA