Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162226508|gb|FC403580.1|FC403580EST: AAATTGAAGCAAAGTCTACAGCGGAGGCTGTGAAAAACTTAGACTTGAAG GATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
genomic: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAGgtttgtgaac ... gtgtatgcagGATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
EST:
gi|18358810|gb|BJ190869.1|BJ190869EST: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAG GATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
genomic: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAGgtttgtgaac ... gtgtatgcagGATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
EST:
gi|18361019|gb|BJ193083.1|BJ193083EST: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAG GATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
genomic: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAGgtttgtgaac ... gtgtatgcagGATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
EST:
gi|18359863|gb|BJ191924.1|BJ191924EST: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAG GATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
genomic: AAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAGgtttgtgaac ... gtgtatgcagGATCAGGTTACATCGGAAAAAGCGCCTGAACATGAAGAGCATCACCACACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGCCGAACCAGAATTCGTTCACCGCATTGGAGTCTGGAACCTCTACGAAAATTGAAGCAGAGTCTACAGCGGAGGCTGTGAAGAACTTAGACTTGAAGgtttgtgaaccttgaactcgttttccatgtgcatattattttcagatatcagagtatcaattttcgcgtcaatgtgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG