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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGAAGAAACTCTCCTTTGGGCCTTGTCAACGCCATCTTCTTTCTCAACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgttactattaccacgattgtggctggatgtactactttctgcatcggtctctttaggcatctttttactcttaacttttagaaattcaccatcttgtctcagttttagttatagacaacctgacttacctgtgaacaatggatgcag

Basic information

species Physcomitrella patens
transcript PP1S41_16V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208369716|gb|DC936408.1|DC936408
EST:     ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGG                         TTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
genomic: ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
EST: gi|208360227|gb|DC950214.1|DC950214
EST:     TGTCAGCC-TGTCCAGG-AAGCACTT-G                         NTGANTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
genomic: TGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
EST: gi|162267251|gb|FC442663.1|FC442663
EST:     TCAGCCTTGTCCAGGAAAGCACTTGG                         TTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
genomic: TCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
EST: gi|162267252|gb|FC442664.1|FC442664
EST:     ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGG                         TTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
genomic: ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT