1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATCACCAATTTCCTGGCTGGTTTATTGATTGCTCTCACCTTGGGCCAGATTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAGgtacgactgcagtttctcatgcgaatccttgatttccaatgatttcgtgatgtttatcgtctttgtttatctatgtagaagtgagccttgaagtcaccatggaacttagtggaattatagcatttaaatttctatagtggccaccggattgacagggtttgcatgccatggattggacag
species | Physcomitrella patens |
transcript | PP1S41_115V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAG GACAATTGGCCATCAGTTGGGTTTGCGTTGGCTGGTGGGCTGGTGCTCTTCEST: gi|100383771|gb|BY969300.1|BY969300
genomic: TTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAGgtacgactgc ... gattggacagGACAATTGGCCATCAGTTGGGTTTGCGTTGGCTGGTGGGCTGGTGCTCTTC
EST: TTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAG GACAATTGGCCATCAGTTGGGTTTGCGTCGGCTGGTGGGCTGGTGCTCTTCEST: gi|100439700|gb|BY962064.1|BY962064
genomic: TTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAGgtacgactgc ... gattggacagGACAATTGGCCATCAGTTGGGTTTGCGTTGGCTGGTGGGCTGGTGCTCTTC
EST: TTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAG GACAATTGGCCATCAGTTGGGTTTGCGTTGGCTGGTGGGCTGGTGCTCTTC
genomic: TTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAGgtacgactgc ... gattggacagGACAATTGGCCATCAGTTGGGTTTGCGTTGGCTGGTGGGCTGGTGCTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCACCAATTTCCTGGCTGGTTTATTGATTGCTCTCACCTTGGGCCAGATTGGCAGCAGCACGCCCGAACAGCCCAATTTCATCACCCAGCTGCATCAGgtacgactgcagtttctcatgcgaatccttgatttccaatgatttcgtgatgtttatcgtctttgtttatctatgtagaagtgagccttgaagtcaccatggaacttagtggaattatagcatttaaatttctatagtggccaccggattgacagggtttgcatgccatggattggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC