1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GAAAATGAATCAACTGGATTACCAACCCTTACCACTAAATCTTGTTCCTCATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgccctgtattgacacacttgttttggggtgctatctacatgaagtagatatctcaaggtcgggtgcaactttagagaaaatcgacctggtat...
species | Physcomitrella patens |
transcript | PP1S414_24V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCT ATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCAEST: gi|208377127|gb|DC910873.1|DC910873
genomic: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgc ... tttggtccagATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCA
EST: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCT ATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCAEST: gi|100354153|gb|BY945737.1|BY945737
genomic: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgc ... tttggtccagATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCA
EST: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCT ATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCAEST: gi|162258016|gb|FC434110.1|FC434110
genomic: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgc ... tttggtccagATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCA
EST: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCT ATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCAEST: gi|18363345|gb|BJ195417.1|BJ195417
genomic: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgc ... tttggtccagATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCA
EST: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCT ATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAEST: gi|67574968|gb|BJ947792.1|BJ947792
genomic: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgc ... tttggtccagATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTA
EST: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCT ATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCA
genomic: ATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgc ... tttggtccagATTGCACTGGAGCGTGAATCAACGACTGTTTGGGAGCTTAGTTTCGTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATGAATCAACTGGATTACCAACCCTTACCACTAAATCTTGTTCCTCATATTGTTGGCTCACTGCCAATGATAGGCTGTTGGGACGAGACAAAAGCTgtaagtctgccctgtattgacacacttgttttggggtgctatctacatgaagtagatatctcaaggtcgggtgcaactttagagaaaatcgacctggtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaaa