1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
CTGAGGAAGATCTTGCTCTTAAGCAGCAGTTGGAACTATATGTGGAAAGAGCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagctacaggaatcagaatatgtcgagtttgttcttttctgtgttttatattatccttattttgtaatgaaaatgtgtgaacgtcttttctttttc...
species | Physcomitrella patens |
transcript | PP1S414_22V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAG GAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGGCACTEST: gi|18350019|gb|BJ182070.1|BJ182070
genomic: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagcta ... tttttttcagGAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGCCACT
EST: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAG GAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGCCACTEST: gi|18345825|gb|BJ177868.1|BJ177868
genomic: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagcta ... tttttttcagGAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGCCACT
EST: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAG GAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGCCACTEST: gi|18355357|gb|BJ187416.1|BJ187416
genomic: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagcta ... tttttttcagGAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGCCACT
EST: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAG GAAAGAAATCAGGACAGCTACNAGCTCCATGACTTCCGTTCCEST: gi|100440492|gb|BY962228.1|BY962228
genomic: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagcta ... tttttttcagGAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCC
EST: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAG GAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTCCCCCAGCCACT
genomic: GCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagcta ... tttttttcagGAAAGAAATCAGGACAGCTACAAGCTCCATGACTTCCGTTCCCAAGCCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGGAAGATCTTGCTCTTAAGCAGCAGTTGGAACTATATGTGGAAAGAGCTCAGGATGCTGAGGAGGGGATCCAAAGAGCAGCTTTGGAAGCTATGAGgtactagctacaggaatcagaatatgtcgagtttgttcttttctgtgttttatattatccttattttgtaatgaaaatgtgtgaacgtcttttctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaaa