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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag

Basic information

species Physcomitrella patens
transcript PP1S40_297V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g21660.1 (Oryza sativa), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagatt--atcttgattaatgtctcatttct----taaccaacgttcatctgacaatag
 || || || || |||||||| || ||||| |||||||| ||||| ||||| |||||| |||  || ||||||||||| ||||||||||||||||| ||||| || ||   |   |   |    |||||| || |  || ||||   | | ||||         | |  | || || ||      | || |      || |  ||    
TCAAAAGGATAAGCGTTTCAGTGGTTCTGTTAAGCTGCCCCACATCCCTCGGCCTAAGTTGAAGGTTTGCATGCTTGGTGATGCTCAGCACGTCGAAGAGgt-atgtt---atgcttctactgattttgcattgac-ttggttttgatatgagatgtggagagaacttttatcgcaattgggtagttactactacgtatttagca----

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttga---ttaatgtctcatttcttaaccaacgttcatctgacaatag
 || || ||||| |||||||||||||| || |||||||| || || || || || |||||||  || ||||||||||| ||||| ||||| ||||||||||| | |||   |      |   |||||    ||   | ||  | ||   |  | |||  ||||   | |   | |   ||  | ||  | ||  |  ||||     
GCAAAAGGACAAGCGTTTCAGCGGCTCCGTCAAGCTGCCCCATATCCCCCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCCCAGCATGTCGAGGAGgtaagattatgatgccatacccattttgattttgtaaatttgtacaccctccgtttagattgaaattgaggattttcctttctcactcatgt--aagtgacc----

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g44380.2 (Oryza sativa), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcattt-ttagattatcttgattaatgtctcatttcttaaccaacgtt-catctgacaatag
 || || ||||| |||||||||||||| || |||||||| || || || || || |||||||  || ||||||||||| ||||| ||||| ||||||||||| | ||  | |  ||| |   |||||    || ||      || |    ||| |||||  |  | | | ||||| || | |||  | ||    |     |||  
ACAAAAGGACAAGCGTTTCAGCGGCTCCGTTAAGCTGCCCCATATCCCCCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCCCAGCATGTCGAGGAGgtaagatatg-atgttgtagccattttg--tttaattcagactttacaggttacattattgtagt-attttctcaatt-tgaacacatgtagtgttactgaatta

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatat--ttgtttcatttttagattat-cttgattaatgtctcatttcttaaccaacgttcatctgacaatag-
 || || || || |||||||| || ||||| ||| |||| ||||| || || ||||||||||  |||||||||||||| ||||| ||||| || || |||||     | | ||  |   || | |||||| |  |  |  |||| |   |   ||||| | ||| | ||||     |||  | |    | | |  |   |  |  | 
TCAAAAGGATAAGCGTTTCAGTGGATCTGTTAAGTTGCCTCACATCCCCCGCCCTAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCATGTTGAAGAGgta----ttgtactcttttatcagttttgcatcaacttccttgtgtacataacagattgtgctttagtaatagaaaattgttgat---aggcttctacaatgaaggg

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G181194_T01 (Zea mays), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgttt-catttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag-
 || || ||||| |||||||| |||||||| ||| |||| ||||| |||||||| |||||||  |||||||||||||| ||||| |||||||| |||||||| | |   |||  |||         |||      || || |||  || || |   |   |  | || |   ||  | |  || || |  |  |  ||   ||  
ACAAAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATCCCTCGTCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCACGTTGAGGAGgtaa-acaggca-gttgatgatgcacttgaaaatgtacttatttatatgttgaacatgcttgcagtagtaaatc--tgcaaaaacaccaatgcttcga-gttact

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G023748_T02 (Zea mays), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatct--tgattaatgtctcatttcttaaccaacgttcatctgacaatag---
 || || ||||| || |||||||| ||||| |||||||| ||||| ||||| ||||||||||  || ||||||||||| ||||||||||| || |||||||| || ||   |   |   || || |   |||   | ||| |||     | |  |||  |  |  | |     ||| || ||  |    ||  | |  | |  ||   
TCAAAAGGACAAGCGCTTCAGCGGTTCTGTTAAGCTGCCTCACATCCCTCGCCCTAAGATGAAGGTTTGCATGCTTGGTGATGCTCAGCATGTTGAGGAGgt-atgtt---atgcttccatcatctcgtcct--gtgttttttttggcgtaaatttacttggtactcaggaattcaattatttgctcttgt--agcgaatatgagctt

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G170561_T01 (Zea mays), 5'ss of exon 4
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag--
 || || ||||| |||||||| |||||| ||||| |||| ||||| |||| ||| |||||||  |||||||||||||| ||||| |||||||| |||||||| | |   |||  |||         |||      || || |||   | ||  |    ||||   | |     || |   || || |  |  |  ||   ||   
ACAAAAGGACAAGCGTTTCAGTGGCTCTATGAAGTTGCCTCACATCCCTCATCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCACGTTGAGGAGgtaa-acaggca-gttgatgatgcacttgaaaatgtacttatttatatgttgaacatgcttg--cagtagtaaatctgcaaaacaccaatgcttcga-gttactc

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G144387_T01 (Zea mays), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatat-ttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag--
 ||||| ||||| |||||||| |||||||| ||| |||| || || |||||||| |||||||  |||||||||||||| ||||| ||||| || |||||||| |    |   |||||  ||  | |    |  |||    | |||  | | | ||  ||  | ||   |||   | |    || || |  |  | ||| | ||   
ACAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCCCATATCCCTCGTCCCAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCATGTTGAGGAGgtaag---caagcattg--atggtctgcttcaacatgcacttttttgtatgttgaacatgctaatggttgttgaactgaaaaaacaccagtgttttga-attattc

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G074769_T01 (Zea mays), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag-
 || || |||||  ||||||| |||||||| ||| |||| | ||| |||||||| |||||||  |||||||||||||| ||||| |||||||| |||||||| | ||  |||  |||         |||      || || |||  || ||  |    ||||   | |     || |   ||   ||       |     ||  
ACAAAAGGACAAGAGTTTCAGTGGCTCTGTTAAGTTGCCTCGCATCCCTCGTCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCACGTTGAGGAGgtaa-ataggca-gttgatgatgcacttgaaaatgtacttatttagttgttgaacatgcttg--cagtagtaaatctgcaaaaacactaatgcttcgagttact

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G369991_T01 (Zea mays), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag-
 || || |||||  ||||||| |||||||| ||| |||| | ||| |||||||| |||||||  |||||||||||||| ||||| |||||||| |||||||| | |   |||  |||         |||      || || |||  || ||  |    ||||   | |     || |   ||   ||       |     ||  
ACAAAAGGACAAGAGTTTCAGTGGCTCTGTTAAGTTGCCTCGCATCCCTCGTCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCACGTTGAGGAGgtaa-acaggca-gttgatgatgcacttgaaaatgtacttatttagttgttgaacatgcttg--cagtagtaaatctgcaaaaacactaatgcttcgagttact

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G862017_T01 (Zea mays), 5'ss of exon 9
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
 || || ||||| |||||||| |||||| | ||| |||| ||||| |||||||| |||||||  |||||||||||||| ||||| || ||||| |||||||| | |   |||  |    ||    ||        || || |||   | ||  |    ||||   | |     || |   ||   ||       |     || 
ACAAAAGGACAAGCGTTTCAGTGGCTCTATTAAGTTGCCTCACATCCCTCGTCCAAAGATGAAGGTGTGCATGCTTGGTGATGCCCAACACGTTGAGGAGgtaa-acaggcagttgatgatgcacttgaaaaatgtacttatttatatgttgaacatgcttg--cagtagtaaatctgcaaaaacactaatgcttcgagttac

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G02970.1 (Glycine max), 5'ss of exon 1
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtca-tattcgc-acattgg--aataatttt-tgccttcatatttgtttcatttttag-attatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
 ||||| ||||| |||||||| |||||||| |||||||| ||||| ||||| || ||||||| | | ||||||||||| ||||||||||| || || ||||||  |||| || | |||    || | | || ||  ||||||  | ||||||  | |  |    |||||||      | |||| |     || | | || |        
ACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtctctatttgccatattcatcaagactcttatggattcataactatttcatgataattagctccttgattgcatgttgatttttacggtaaagct-atgt--------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA13G39270.2 (Glycine max), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg--cacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaac-caacgttcatctgacaatag
|||||| ||||| |||||||| |||||||| ||| |||| || |||||||| || |||||||   | || |||||||||||||| |||||||| |||||||| | | |     |   || |   |     |   |   | | || |  ||  | | ||  || |||  || |  ||||   |||| |   |    | ||   |   
CCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCATATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCACGTTGAGGAGgtaacaataatttatgctgtagagaaccacgagatt-caatcgtgtgcttcattgttttcctagat--attttacattagataacacctgggatgtatgctta---

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA19G37980.1 (Glycine max), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgt-catattcg-cacattggaata-atttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
 |||||||| || |||||||| || ||||| ||||| || || |||||||| |||||||||| | | |||||||| || |||||||||||||| || ||||| |||||||  |  | |  |||| || | |||||| |   |  | |  |  |  ||   | ||| || |  |    ||| ||||   | ||| |  |        
TCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGgttcatattcttctaactataatatatatatgcctttactataatat--tcatgcgacagttttgtttcaaatggatttttttaattcaagtttaaattttt----

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGg--tcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaa-ccaacgttcatctgacaatag
 ||||| ||||| |||||||| ||||| || ||| |||| ||||| ||||| || ||||||| | | ||||||||||| ||||||||||| || || ||||  ||  ||| || |  |  |   |   |   ||| || || |     |  |||| |  | | |   |    |   |||   ||   ||| |   | | |   |  
ACAGAAGGACAAGCGTTTCAGTGGCTCCGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtatctaatttgccctattcatcgaaact---ctttatgtt-gccatttaattaggtgctgtagggaacccccaagtttaagaaattaacctcattgttatctt--

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA12G31040.2 (Glycine max), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaat--aatttttgc-cttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
|||||| ||||| ||||| || |||||||| ||| |||| ||||||||||| || |||||||   | || |||||||||||||| || ||||| || ||||| |||  |  |  |    ||  ||   |||  |   || ||   ||   |   | | ||| ||| || |       | | |   |   | |||   | | |    
CCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGgtaataagctgatctaattatcaaacccttgtgcgagattttcaattgggtgcaataatatattgctttacagactgtgttt--gcttcctttccatttata----

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT2G27530.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
 || || || || |||||||| || ||||||||||| ||||| |||||||| || || ||||   | || |||||||||||||||||||| || |||||||| ||  |   |  |    |   ||| ||  |     || |||| | ||   ||||  |   |  | ||| | || | |      |                 
ACAAAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAAGATCTGTATGCTTGGAGATGCTCAGCATGTTGAGGAGgtgat--tgaaatctctatactttttgtgtatcttgtttggtttgaattggtgattgacacaa--agtgtttgatgtttgttttgatag--------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv08s0007g03340.t01 (Vitis vinifera), 5'ss of exon 3
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgcct--tcatatttgtttcatttttagattatcttgattaatg-tctcatttcttaaccaacgttcatctgacaatag
||| || ||||| ||||| || || |||||||||||||||||||| ||||||||||||||||   | ||||||||||| ||||||||||| || || ||||| | |||      |||   ||  |      |              || |   |  | || ||||||  |  | |||||| |||| |   | |  ||         
CCAAAAGGACAAGCGTTTTAGTGGGTCTGTGAAGCTGCCACACATCCCTCGTCCTAAGATGAAGATCTGCATGCTTGGTGATGCTCAGCATGTGGAAGAGgtaa-attactgttttgacttatctaacaaataactgagaacaaaacaataaaaattgattttgatttctcctatcattttttaatccttgattttcctgt-----

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataattt--ttgccttcatatttgtttcatttttagattatc-ttgattaatgtctcatttcttaaccaacgttc-atctgacaatag
|||||| ||||| |||||||| || ||||||||| |||| ||||| ||||| || |||||||  || ||||||||||| |||||||| ||||| || ||||| ||  |    || | |  |   ||  | ||  | | |   ||   |        | ||   | ||| | |  | |||| | ||| |   ||   | | |      
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaat-atttttcaactatttttttgtttaa------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ31249 (Selaginella moellendorffii), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
 ||||| ||||| |||||||||||||| ||||||||||| |||||| | || || |||||||||||||||||||| || ||||| ||||| || |  ||||| | |||         ||      | |  | |  || |||    |||    || |  || |   | ||  |  || |  |                      
GCAGAAGGACAAGCGTTTCAGCGGCTCGGTGAAGCTGCCTCACATTGCGCGGCCCAAGATGAGAGTGTGCATGCTCGGTGATGCGCAGCATGTAGGCGAGgtaagatt---------gagcgccctctctcctt-tagttgccggatt----gaatcactggtccattgcttttttgcacag---------------------

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ34353 (Selaginella moellendorffii), 5'ss of exon 2
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag
 ||||| ||||| |||||||||||||| ||||||||||| |||||| | || || |||||||||||||||||||| || ||||| ||||| || | |||||| | |||         ||      | |  | |    |||||| |    ||  || |   || |    ||  | ||| ||   ||                  
GCAGAAGGACAAGCGTTTCAGCGGCTCGGTGAAGCTGCCTCACATTGCCCGGCCCAAGATGAGAGTGTGCATGCTCGGTGATGCGCAGCATGTAGGGGAGgtaagatt---------gagcgccctgtctcct----tttgttgccggattgaatcac--tggtc--cgttgctttttttgcacag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824616|gb|BJ582682.1|BJ582682
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162236408|gb|FC412775.1|FC412775
EST:     GTCTTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18353843|gb|BJ185898.1|BJ185898
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162265770|gb|FC443176.1|FC443176
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162208146|gb|FC384588.1|FC384588
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208382464|gb|DC927998.1|DC927998
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18345258|gb|BJ177300.1|BJ177300
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37835160|gb|BJ593172.1|BJ593172
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208399927|gb|DC904981.1|DC904981
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162211761|gb|FC387425.1|FC387425
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37846164|gb|BJ604172.1|BJ604172
EST:     GTCNTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18353686|gb|BJ185741.1|BJ185741
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18366048|gb|BJ198126.1|BJ198126
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162207625|gb|FC384078.1|FC384078
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18326967|gb|BJ158968.1|BJ158968
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208356336|gb|DC914254.1|DC914254
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162277750|gb|FC453589.1|FC453589
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37835317|gb|BJ593329.1|BJ593329
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18364826|gb|BJ196899.1|BJ196899
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162265771|gb|FC443177.1|FC443177
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|15261368|gb|BI436678.1|BI436678
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162206162|gb|FC383155.1|FC383155
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162246407|gb|FC419943.1|FC419943
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162219934|gb|FC396749.1|FC396749
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162219933|gb|FC396748.1|FC396748
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208347658|gb|DC912875.1|DC912875
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|67695799|gb|BJ956032.1|BJ956032
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162208145|gb|FC384587.1|FC384587
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37842024|gb|BJ600032.1|BJ600032
EST:     GTCNTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208400389|gb|DC925027.1|DC925027
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162248093|gb|FC420098.1|FC420098
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208354514|gb|DC926649.1|DC926649
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162211762|gb|FC387426.1|FC387426
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37851150|gb|BJ609158.1|BJ609158
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18367268|gb|BJ199350.1|BJ199350
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162277749|gb|FC453588.1|FC453588
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37845410|gb|BJ603418.1|BJ603418
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208350513|gb|DC926466.1|DC926466
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162236409|gb|FC412776.1|FC412776
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162246408|gb|FC419944.1|FC419944
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18346490|gb|BJ178533.1|BJ178533
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162268991|gb|FC445483.1|FC445483
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|18362029|gb|BJ194096.1|BJ194096
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162186775|gb|FC362811.1|FC362811
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162258972|gb|FC435915.1|FC435915
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162207624|gb|FC384077.1|FC384077
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|67572426|gb|BJ945250.1|BJ945250
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162268992|gb|FC445484.1|FC445484
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37847731|gb|BJ605739.1|BJ605739
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|22492606|gb|BU052529.1|BU052529
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162234144|gb|FC410553.1|FC410553
EST:     GCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|208378252|gb|DC918873.1|DC918873
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|37841468|gb|BJ599476.1|BJ599476
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|7648077|gb|AW739060.1|AW739060
EST:     GAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
EST: gi|162186776|gb|FC362812.1|FC362812
EST:     GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAG                         GCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG
genomic: GTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 87

CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcg ... ctgacaatagGCAAACAAAATCGGTATGGAATACATGGATGTTGAGAGCTTGAAGAAGATGAACAAGAATAAGAAGCTCGTCAAGAAGCTGGCTAAGAAGTACCATGCTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataatttttgccttcatatttgtttcatttttagattatcttgattaatgtctcatttcttaaccaacgttcatctgacaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG