Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag

Basic information

species Physcomitrella patens
transcript PP1S39_424V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g03640.1 (Oryza sativa), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||||||||| ||||| ||||||||||| ||  |||||||| | || || ||||||||||||||||||||||| || ||||| ||||||||||||||||   ||   | |     || ||      |||| ||| | |  ||| |  |     | |   |   ||  | ||| ||  |   | |                 
-GTTGGAGCTCCTGCTCGTGTTGGTCTTGTTGCTCCTGTTGATGTGGTGGTTCCCCCTGGCAACACTGGTCTGGATCCATCCCAGACCTCTTTCTTCCAGgtgatcatttgttgatttg-ttaataaatactatcttgtctgcttagtcaagtagtcaactacatgttctcactgttcctatcttgttacag--------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os12g03880.1 (Oryza sativa), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||||||||| ||||| ||||| ||||| ||  |||||||| |||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||    | | ||    |  || |  || ||    | |  ||| ||| | ||   |  | |    |||| | |  |  ||  ||                     
-GTTGGAGCTCCTGCTCGTGTTGGTCTGGTTGCTCCTGTTGATGTGGTTGTTCCCCCTGGAAACACTGGTCTCGATCCCTCCCAGACTTCTTTCTTCCAGgtga----tcatttgtcgatgtgttaacatattgtttatcctcagagtcaaatacaagttct----cactgttctatcttgttacag-------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g04070.1 (Oryza sativa), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||||||||| ||||| ||||| ||||| ||  |||||||| | || || ||||| |||||||||||||||||||| |||||||||||||| |||||||    | | ||    |  || |  |  |||   | | ||| |||| | ||   |  || |  |   | ||  ||  | |||                      
-GTTGGAGCTCCTGCTCGTGTTGGTCTGGTTGCTCCTGTTGATGTGGTGGTTCCCCCTGGAAACACTGGTCTGGATCCCTCCCAGACTTCTTTCTTTCAGgtga----tcatttgtagatgtgttaacc-atagtttatcttcgcagtcaaatacaa-gttctcactgttctctcttgtt-acag---------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G179976_T01 (Zea mays), 5'ss of exon 2
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatat-catgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || || |||||||| ||||| ||||| ||||| ||  |||||||  | || || |||||||||||||| ||||||||||| ||||| |||||||||||||||||  |  ||  |    ||   |  | | ||          |||  || ||  |  |  || |||   |||| |                               
-GTTGGGGCTCCTGCTCGTGTTGGTCTGGTTGCTCCTGTTGATGTTGTCGTGCCCCCTGGCAACACTGGGCTGGATCCCTCCCAGACCTCTTTCTTCCAGgtgagcctggaagcaatatctgtgttactgttaaatgcacacacaccatgtcagtttctcattcgtcatttttcag-------------------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G066460_T01 (Zea mays), 5'ss of exon 2
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatgg--cagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || || |||||||| ||||| ||||| ||||| ||  |||||||  |||| || |||||||||||||| |||||||| || ||||| ||||||||||||||||  ||  ||  |    ||   ||   ||| ||  |||    ||||   |     |    |||   || ||  | ||| |  ||                      
-GTGGGGGCTCCTGCTCGTGTTGGTCTGGTTGCTCCAGTTGATGTTGTTGTGCCCCCTGGCAACACTGGGCTGGATCCGTCCCAGACCTCTTTCTTCCAGgtgaccttggaagcaacacctctgtgatacagctaaaatgcaagcacacaaa-----ggcgcttttctcatttgtcatttgttccag---------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G42260.2 (Glycine max), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctg-acacctgatgcgtgttgattatcag----
 || ||||||||||| ||||| ||| | ||||| || ||||||||  |||| |||||||||||||| || || |||||||||||||| ||||||||||||||  |         | |  ||||     |||  |   || |     ||    | |    ||||   |||| | |  ||||  | |  |  |   |     |||  ||    
-GTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGgttgg-------caatgttcttg----tagaatttgggtgtggttggttgtgttttggtttttaaacactattcaattctatatattttttaaataaaacttagtagaagt

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA14G06630.1 (Glycine max), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||||||||| ||||| ||| | |||||||| ||||||||  |||| |||||||||||||| || || |||||||| ||||| ||||||||||||||  |   |    |         ||    |   |  |   ||     ||   | | | |  |  |  |  ||     | | ||      |    || |   |    
-GTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCCCCAATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTCGATCCCTCCCAGACCTCTTTCTTCCAGgttggtaatcttctgtttgtagaatt-tgggggtggttgatttgttttggtttttaaaaact-attaatattttaaatattacgttgagtagaagtggggaa----

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA11G35060.1 (Glycine max), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattt----------------aaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || | ||||||||| ||||| ||| | ||||| || |||||||| ||||| || || |||||||| || ||||||||||||||||| |||||||| ||||| |  ||                   |||| | |||| |  | |  || | ||||   ||    | || || |   |||      |||   || | |    | || |   || ||| | ||
-GTGGCAGCTCCTGCTCGTGTAGGTTTAGTTGCACCTATTGATGTTATTGTTCCCCCAGGCAACACAGGGCTGGATCCCTCTCAGACCTCTTTCTTTCAGgttaatttctgcaatcttgttcttgggattaagaacttaaatgaacttacc-tgttgatactagtatatatggtggattggtggtgttcacattttaattaat-atacacattaatt-ttag

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G03300.1 (Glycine max), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattt--aaattacgcacttgatggcagatatcatgtt--ttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || | ||||||||| ||||| ||| | ||||| || ||||||||  |||| || || |||||||| || ||||||||||||||||| |||||||| ||||| |  ||    |||   |  | ||     |  ||  |  ||  || | | |  |   ||||| | | |    | | | | | | |   | |                  
-GTGGCAGCTCCTGCTCGTGTAGGTTTAGTTGCACCTATTGATGTTGTTGTTCCCCCAGGCAACACAGGGCTGGATCCCTCTCAGACCTCTTTCTTTCAGgttaatttctgcaatcttgttcatggaacgaattaagaacttaattgaaattacccgttgataatatatatggtgttcatatttaatttcag------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G03290.1 (Glycine max), 5'ss of exon 5
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagata--tcatgttttcacag----tgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag--
                      ||  | ||||| || ||||||||  |||| |||||||||||||| || |||||||||||||| || |||||||| ||||| | ||||     |     ||| ||| | |||  | |    || |  |    |  ||  ||||| ||  |    |   |   | | |   | | ||| |       | |    
---------------------AGGGTTGGTTGCACCTATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTGGATCCCTCTCAAACCTCTTTCTTTCAGGTTA-ATTTCTGCAATCTTGTTgttggaatataattaagaacttaattgaatttaccagttgataattaatatggtgctcacat-taatttcaggtgcttaacatccaaccaag

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA09G24800.1 (Glycine max), 5'ss of exon 1
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgag--atttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
    ||||||| ||| | ||| ||| | |||||||| ||||||||  | || |||| ||||||||| || || |||||||||||||| ||||||||| ||||  |  || |   ||  | |     ||| | |                                                                           
----GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTTGgtaatcttctttttgtagaatttgggaaag--------------------------------------------------------------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv13s0019g03970.t01 (Vitis vinifera), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcact--tgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||||||||| ||||| ||  | |||||||| |||||||| ||||| || ||||||||||| || || || || || ||||| ||||||||||||||  |  |  | | |  || |  ||||  |  || |    ||||    ||  ||  || |  |    | |||     |||| |                         
-GTTGGAGCTCCTGCTCGTGTTGGATTAGTTGCCCCAATTGATGTCATTGTCCCACCTGGCAACACGGGACTTGACCCTTCACAGACCTCTTTCTTCCAGgtttg--tagactcagtcaataatgattccctattttcctttttgttcgtcgcagttgtttctcatgctactact--tttcag-------------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv13s0067g00270.t01 (Vitis vinifera), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgac-atctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||||||||| ||||| ||  | ||||| || |||||||| ||||| || ||||| |||||||| || || || || ||||| ||||||||||||||    ||  | | | ||| |  |       | |  | || |  |   |   |  || |  |  | | || | ||  || | |                        
-GTTGGAGCTCCTGCTCGTGTTGGATTAGTTGCTCCTATTGATGTCATTGTCCCACCTGGTAACACTGGACTCGACCCTTCCCAGACCTCTTTCTTCCAGgt----ttgtagtcaagcaatgaaaattctgtgttttcttctggcctggctgagttgtttctcaggcaacctacctcttttcag-----------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ14871 (Selaginella moellendorffii), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 |||||||| || || ||||| || ||||| || || ||||| |||| | | |||||||| | ||||||||| ||||| || ||||| ||||||||||||||  | |  | |  ||   || | |      | |  |  ||    | | | |||| | |   |    |||||| |                               
-GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTCCTCCTGGAAGCACTGGTCTTGATCCATCGCAGACATCTTTCTTCCAGgttcg-tccataggactatctcgttc-----tgtgttacttgtg-attcatatcttaaaccat-caaactttcag-------------------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ13245 (Selaginella moellendorffii), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||| ||||| ||||| || ||||||||||| || || || |   | |||||||| | |||||| || |||||||| ||||| ||||||||||||||  ||      ||      ||         | |  |||||     ||      | ||| || |   |||| | |                               
-GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccctcttttttttttt---------ttttttgtttctgtggt------tcatactt-gcaaacttccag-------------------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ38349 (Selaginella moellendorffii), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgag---atttaaattacgcacttgatggcagatatcat-gttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 |||||||| || || ||||| || ||||| || || ||||| |||| | | |||||||| | ||||||||| ||||| || ||||| ||||||||||||||  |   ||   | |  | |  |   ||  |  | | || | ||    |    ||||  |  ||  |                                          
-GTCGGAGCGCCAGCTCGTGTCGGGCTTGTAGCACCGATTGACGTGACTATTCCTCCTGGAAGCACTGGTCTTGATCCATCGCAGACATCTTTCTTCCAGgttcgtccataggactatctcgttctgtgttacttgtgattgattatctaaaaccatcaaactttcag------------------------------------------

upper sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ24514 (Selaginella moellendorffii), 5'ss of exon 3
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagatttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag
 || ||||| ||||| ||||| || ||||||||||| || || ||||   | |||||||| | |||||| || |||||||| ||||| ||||||||||||||  ||   ||     || || | |        ||||  || || | |  ||                                                      
-GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaaagaggtgctct-gtttctgtggttcatacttgcaaacttccag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162235712|gb|FC411015.1|FC411015
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208359486|gb|DC954039.1|DC954039
EST:     TACNTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208393792|gb|DC946086.1|DC946086
EST:     TACCTCCTGGCAACANTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|67696915|gb|BJ957148.1|BJ957148
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208388458|gb|DC945650.1|DC945650
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|162256334|gb|FC432344.1|FC432344
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208350762|gb|DC918222.1|DC918222
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|100356430|gb|BY946361.1|BY946361
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208397791|gb|DC912560.1|DC912560
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GCCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208348667|gb|DC926342.1|DC926342
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GCCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|162235713|gb|FC411016.1|FC411016
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208363047|gb|DC957988.1|DC957988
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208371809|gb|DC951669.1|DC951669
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208358579|gb|DC946540.1|DC946540
EST:     TGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|67724916|gb|BJ975175.1|BJ975175
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208385964|gb|DC956802.1|DC956802
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208367525|gb|DC954957.1|DC954957
EST:     TACNTCNTGGCAACANTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208367550|gb|DC956091.1|DC956091
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208372295|gb|DC948484.1|DC948484
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTCTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208381480|gb|DC919482.1|DC919482
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208386487|gb|DC949146.1|DC949146
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|100358392|gb|BY983882.1|BY983882
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAG
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAG
EST: gi|208367527|gb|DC954959.1|DC954959
EST:     TACNTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208388284|gb|DC945588.1|DC945588
EST:     TACCTCCTGGCAACACTGGTNTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208371005|gb|DC944380.1|DC944380
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|67727698|gb|BJ977957.1|BJ977957
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208388345|gb|DC949317.1|DC949317
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208368977|gb|DC955062.1|DC955062
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208358580|gb|DC946541.1|DC946541
EST:     CTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: CTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208360253|gb|DC950226.1|DC950226
EST:     TACNTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208362767|gb|DC950567.1|DC950567
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
EST: gi|208368751|gb|DC955194.1|DC955194
EST:     TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAG                         GTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT
genomic: TACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 42

GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgagattta ... tgattatcagGTCCTCAACATCCCCACGAAGATTAACAAGGGTACTGTCGAAATTATTGCTCCTGTAGAGCTCGTCCACAAGGGTGACAAGGTCGGATCATCCGAGGCTG




<











<


<