1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTCGGGCGCACCGAGGAGGAATTAGCGCACCTGCGCTCCCGGAGTCAAGTGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaacccgatcgtgaaatgagagagttaccaatgattcaagcaacaactagttttcggacttggattttagaattcgatgccctcgtgctttgttgcgaacaattcctactcgaaaatcaatggtttggctttcacatccaaacgcag
species | Physcomitrella patens |
transcript | PP1S39_407V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTG CCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATGEST: gi|100373943|gb|BY967868.1|BY967868
genomic: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaaccc ... ccaaacgcagCCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATG
EST: TGACAAATGAAGGCGAGGTGTATTGGCCTAATCCCAACATCCGAGATCTG CCCAAGGAGTTCGAGACTAGGGGGACGATTATTCAGAGATACCCTGAGATGEST: gi|208395855|gb|DC911864.1|DC911864
genomic: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaaccc ... ccaaacgcagCCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATG
EST: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTG CCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATGEST: gi|100448239|gb|CJ972538.1|CJ972538
genomic: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaaccc ... ccaaacgcagCCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATG
EST: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTG CCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATGEST: gi|162267703|gb|FC443485.1|FC443485
genomic: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaaccc ... ccaaacgcagCCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATG
EST: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTG CCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATG
genomic: TGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaaccc ... ccaaacgcagCCCAAGGAGTTCGAGACGAGGGTGACGATTATTCAGAGATACCCTGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGGGCGCACCGAGGAGGAATTAGCGCACCTGCGCTCCCGGAGTCAAGTGACAAATGAAGGCGAGGTGTATTGTCCTAATCCCAACATCCGAGATCTGgtaagaacccgatcgtgaaatgagagagttaccaatgattcaagcaacaactagttttcggacttggattttagaattcgatgccctcgtgctttgttgcgaacaattcctactcgaaaatcaatggtttggctttcacatccaaacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC