1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGAACGCTGAGACCTTCTTCGCATCGGCGCCCCCTCTGAGGGATCGAGATGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccaccatcttcccttgtttactctcaagttgaagtggttttttgcgctgtctgttgtcagtagcaaaattatgttaattttggccacgacatatt...
species | Physcomitrella patens |
transcript | PP1S39_350V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCG CAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCAEST: gi|208389659|gb|DC933589.1|DC933589
genomic: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccacc ... gactttgtagCAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCA
EST: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCG CAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCAEST: gi|208364463|gb|DC958032.1|DC958032
genomic: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccacc ... gactttgtagCAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCA
EST: TGCTATTGTTGCTAAAGTGGAAGNATTCGTCCAGCGCAGATTGCCAACCG CAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCAEST: gi|208363908|gb|DC939557.1|DC939557
genomic: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccacc ... gactttgtagCAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCA
EST: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCG CAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCAEST: gi|208397588|gb|DC912206.1|DC912206
genomic: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccacc ... gactttgtagCAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCA
EST: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCG CAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCA
genomic: TGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccacc ... gactttgtagCAAGTGGCAATCGAGCTTCGAGGATGGTTTGTATAACATCAGGCGGGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAACGCTGAGACCTTCTTCGCATCGGCGCCCCCTCTGAGGGATCGAGATGCTATTGTTGCTAAAGTGGAAGAATTCGTCCAGCGCAGATTGCCAACCGgttttccaccatcttcccttgtttactctcaagttgaagtggttttttgcgctgtctgttgtcagtagcaaaattatgttaattttggccacgacatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT