1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGAGGCGATTTGAGGCGGAATCTAATCGACTCTACTGAGTCGCAATATGTTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGGgtgagtttatgtgttaacatactttgttttggacgtcgaatccaaaatacttactgaatttattccattttcatattgatttaatggtactgcttatgat...
species | Physcomitrella patens |
transcript | PP1S395_5V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGG GAGTAAGCCATTGCAGATTTGGGACAAGGAATEST: gi|37841910|gb|BJ599918.1|BJ599918
genomic: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGGgtgagtttat ... gtgtgatcagGAGTAAGCCATTGCAGATTTGGGACAAGGAAT
EST: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGG GAGTAAGCCATTGCAGATTTGGGACAAGGAATEST: gi|208367202|gb|DC947866.1|DC947866
genomic: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGGgtgagtttat ... gtgtgatcagGAGTAAGCCATTGCAGATTTGGGACAAGGAAT
EST: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTNATAGCCTTGG GAGTAAGCCATTGCAGATTTGGGACAAGGAATEST: gi|208367661|gb|DC955006.1|DC955006
genomic: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGGgtgagtttat ... gtgtgatcagGAGTAAGCCATTGCAGATTTGGGACAAGGAAT
EST: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCA-TTTTTATAGCCTTGG GAGTAAGCCATTGCAGATTTGGGACAAGGAAT
genomic: TTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGGgtgagtttat ... gtgtgatcagGAGTAAGCCATTGCAGATTTGGGACAAGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGGCGATTTGAGGCGGAATCTAATCGACTCTACTGAGTCGCAATATGTTCAAGAACACATTTCAGTCGGGGTTCCTGTCCATTTTTTATAGCCTTGGgtgagtttatgtgttaacatactttgttttggacgtcgaatccaaaatacttactgaatttattccattttcatattgatttaatggtactgcttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC