1 5' 3' | 2 5' 3' | 3 5' 3' |
GCACGATCTGGTACACGTCACGTTGTACAGCTAGTGAGCTTGCAGAAGCCGTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctcttgcccttatctaatgtcgttaggatgattctttatttctctgtattattggaatagcaaggtttgtgtatgtggctgtagaactgtgaggg...
species | Physcomitrella patens |
transcript | PP1S395_20V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATG ATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTCEST: gi|162239030|gb|FC416195.1|FC416195
genomic: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctctt ... cttcccacagATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
EST: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATG ATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTCEST: gi|162239600|gb|FC416856.1|FC416856
genomic: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctctt ... cttcccacagATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
EST: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATG ATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTCEST: gi|18347934|gb|BJ179981.1|BJ179981
genomic: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctctt ... cttcccacagATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
EST: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATG ATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTCEST: gi|208399387|gb|DC924817.1|DC924817
genomic: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctctt ... cttcccacagATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
EST: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATG ATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTCEST: gi|162247717|gb|FC421724.1|FC421724
genomic: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctctt ... cttcccacagATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
EST: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATG ATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
genomic: GTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctctt ... cttcccacagATGTGAAATCTGTTCTTCACAAAAAGAGAAAAGACGGAAAGAAAGCACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGATCTGGTACACGTCACGTTGTACAGCTAGTGAGCTTGCAGAAGCCGTTGTCAGATGACGGTAGTGAGGTTTATGGTAGCGATGACGAGCCTGATGgtaagctcttgcccttatctaatgtcgttaggatgattctttatttctctgtattattggaatagcaaggtttgtgtatgtggctgtagaactgtgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG