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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCATGGAACACACGAGTACCATCAATACACGCTGGACAGCCTGAGACAGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcatcaaaccttctccatcaccattttataacgtttagtacctttttgtgatacttgcgtatctgtgaactgtaaatcagttgtttaaacagga...

Basic information

species Physcomitrella patens
transcript PP1S392_18V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100408791|gb|BY974269.1|BY974269
EST:     AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAG                         GGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
genomic: AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcat ... atcttggcagGGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
EST: gi|162151491|gb|FC326996.1|FC326996
EST:     AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAG                         GGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
genomic: AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcat ... atcttggcagGGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
EST: gi|18365752|gb|BJ197829.1|BJ197829
EST:     AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAG                         GGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
genomic: AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcat ... atcttggcagGGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
EST: gi|162171331|gb|FC347243.1|FC347243
EST:     AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAG                         GGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
genomic: AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcat ... atcttggcagGGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
EST: gi|67571905|gb|BJ944729.1|BJ944729
EST:     AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAG                         GGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
genomic: AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcat ... atcttggcagGGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
EST: gi|100375997|gb|BY968265.1|BY968265
EST:     AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAG                         GGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG
genomic: AGGCCATGGCTAACACGCAAACCATGTGCGCAGTTCTTCTAGATACTAAGgtaaactcat ... atcttggcagGGGCCAGAGATTCGAACCGGGAGTTTGGCAGCTGGCAAGCCAATTCAACTG