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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtctttctggtgattcacatgtacttcttcttttttttttttttttttttttaaatttttcctcgatctgtgcctggtattgtatccactgcttttgattttatttcgttcgatgcaaacgcag

Basic information

species Physcomitrella patens
transcript PP1S38_376V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37832499|gb|BJ590511.1|BJ590511
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162203216|gb|FC379313.1|FC379313
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|37849607|gb|BJ607615.1|BJ607615
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162248381|gb|FC420906.1|FC420906
EST:     GCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|18370115|gb|BJ201717.1|BJ201717
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|37841187|gb|BJ599195.1|BJ599195
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGC-AGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162202837|gb|FC379819.1|FC379819
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162237079|gb|FC413238.1|FC413238
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|18368504|gb|BJ200589.1|BJ200589
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|37850940|gb|BJ608948.1|BJ608948
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162251657|gb|FC426063.1|FC426063
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162276406|gb|FC452656.1|FC452656
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162271900|gb|FC448110.1|FC448110
EST:     CAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: CAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162237080|gb|FC413239.1|FC413239
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162213580|gb|FC389452.1|FC389452
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|37848210|gb|BJ606218.1|BJ606218
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CNTGCAAGGCCAGAGGGTCGAAATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCG-GATTTGCGAGTGCACTTCAAG
EST: gi|18344500|gb|BJ176540.1|BJ176540
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162202838|gb|FC379820.1|FC379820
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162248380|gb|FC420905.1|FC420905
EST:     GCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162217445|gb|FC393121.1|FC393121
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162177227|gb|FC352656.1|FC352656
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|18364022|gb|BJ196095.1|BJ196095
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGC-AGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|18360355|gb|BJ192417.1|BJ192417
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162272416|gb|FC449055.1|FC449055
EST:     CGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: CGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162196966|gb|FC373332.1|FC373332
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162203215|gb|FC379312.1|FC379312
EST:     TCAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: TCAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|18371592|gb|BJ203194.1|BJ203194
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGAATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|37851774|gb|BJ609782.1|BJ609782
EST:     TCAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGN                         CCTGCAAGGCCAGAGGGTCGAATTTGCGAGTGCACTTCAAG
genomic: TCAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162217446|gb|FC393122.1|FC393122
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162269116|gb|FC444984.1|FC444984
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162271899|gb|FC448109.1|FC448109
EST:     CAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: CAACAATGGTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|18355556|gb|BJ187615.1|BJ187615
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162251656|gb|FC426062.1|FC426062
EST:     TGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCCCTTCAAG
genomic: TGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
EST: gi|162262697|gb|FC438479.1|FC438479
EST:     GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGG                         CCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG
genomic: GTTAAGTATGCGAGGGATCCGGATAATTCGACCAAGGgtaggtcttt ... gcaaacgcagCCTGCAAGGCCAGAGGGTCGGATTTGCGAGTGCACTTCAAG