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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTACACGAAGTTGGAGACTGTGAGTGCTGAGGACTATTTCTGTCGATTCGAGTATAAGGCAACCACTGGCGGTTTCACCCCTGATCGCGTCGCTGTgtaaggctccgcattgcatgaatgagtcgtttaagatgggcataacctatgaagtttgcgtgtggtaatgcgcagcgcatgttaggcgttgggtcttctgtgaggtgcagtgagtcagggttaggtttgtgcagttaacgactttgtcgatttcgttgataacttggaatggggtgtttcag

Basic information

species Physcomitrella patens
transcript PP1S384_37V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S384_37V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA12G20180.1 (Glycine max), 5'ss of exon 2
AGAACTACACGAAGTTGGAGACTGTGAGTGCTGAGGACTATTTCTGTCGATTCGAGTATAAGGCAACCACTGGCGGTTTCACCCCTGATCGCGTCGCTGTgtaaggctccgcattgcatgaatgagtcg--tttaagatgggcataacctatgaagtttgcgtgtggtaatgcgca-gcgcatgttaggcgttgggtcttctgtgaggtgcagtgagtcagggttaggtttgtgcagttaacgactttgtcgatttcgttgataacttggaatggggtgtttcag
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AGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTgtgagtttttccctttttgaaaaaaatatgttttttccctcaaattatccagaaagttcgattttggtagtgcctatgagaatttaatacatt----ttttggt---------------------------------------------------------------------------------