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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACCAAAGAGACGAGTGTTGAAGTTACCATCAATTTGGATGGAACCGGAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatcaaatttttccattgcttttgccagtagtgcagaactggagctttgagttcttttgtttgaaatttcatcctgaaagaatctactgttgtag...

Basic information

species Physcomitrella patens
transcript PP1S37_83V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196840|gb|FC373895.1|FC373895
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162222109|gb|FC397337.1|FC397337
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162196839|gb|FC373894.1|FC373894
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|208369522|gb|DC936312.1|DC936312
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162189059|gb|FC365177.1|FC365177
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|18337884|gb|BJ169908.1|BJ169908
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162222108|gb|FC397336.1|FC397336
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATNGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162153155|gb|FC329561.1|FC329561
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|208361844|gb|DC950116.1|DC950116
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162208762|gb|FC384898.1|FC384898
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATNGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162208763|gb|FC384899.1|FC384899
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162271019|gb|FC447424.1|FC447424
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATGGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|37838754|gb|BJ596762.1|BJ596762
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162271020|gb|FC447425.1|FC447425
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162150420|gb|FC326692.1|FC326692
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
EST: gi|162150421|gb|FC326693.1|FC326693
EST:     GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGAT                         CAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC
genomic: GAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 27 (upstream exon), 34 (downstream exon)
Score: 5

AGAAACCAAAGAGACGAGTGTTGAAGTTACCATCAATTTGGATGGAACCGGAATATGTGATTGCGACACTGGCATTCCCTTTCTGGATCACATGCTTGATgtaagtatca ... tcaacaacagCAATTGGCGTCGCATGGCCTCTTTGACGTGCGGGTAAAGGCCAAAGGAGACACTCACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGG




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