Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTATGCTGTGACTGTCTTGCAAACACTCCTTGGAGGAGGGGGGTCTTTTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccggcgcattggcaacagaagctggttcattgattatgtagcaggctgttcacgatttgtagaggcaggagcattttctgatgagtaaacttgccaatgagatttttgacctgaacatcgtatttgatttcttactttattttgatttatctgttttatttgcag

Basic information

species Physcomitrella patens
transcript PP1S37_50V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S37_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g53700.1 (Oryza sativa), 5'ss of exon 7
TTCCTATGCTGTGACTGTCTTGCAAACACTCCTTGGAGGAGGGGGGTCTTTTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccggcgcattggcaacagaagctggttcattgattatgtagcaggctgttcacgatttgtagaggcaggagcattttctgatgagtaaacttgccaatgagatttttgacctgaacatcgtatttgatttcttactttattttgatttatctgttttatttgcag
                         |  ||| | |||||||| || ||||| ||||||||||||||||| ||||| ||| | |||||||||| ||    | | |   |  | ||||     || | | |  |  |   |||| || |    ||  |  | |||| |  |     | |   |   | ||    |                                                                              
-------------------------ATGCTCATGGGAGGAGGTGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGTgtat---gttgaattc--cacattcttgtca-atgtt--tcaaaaaattaagttgacttcttgtgccaatttcttaacattagcgtgatgctttatttacag-----------------------------------------------------------------------------

upper sequence: PP1S37_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G005036_T01 (Zea mays), 5'ss of exon 7
TTCCTATGCTGTGACTGTCTTGCAAACACTCCTTGGAGGAGGGGGGTCTTTTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccggcgcattggcaacagaagctggttcattga-ttatgtagcaggctgtt-cacgatttgtagaggcaggagcattttctgatgagtaaacttgccaatgagatttttgacctgaacatcgtatttgatttcttactttattttgatttatctgttttatttgcag
                         |  ||| | |||||||| ||||| || ||||||||||| ||||||||||||||| | |||||||||| ||  |  ||        |      |  | |||     |   |   | ||||||         |  |||||  | |      |     || | | |                                                                                     
-------------------------ATGCTCATGGGAGGAGGAGGGTCCTTCTCTGCTGGTGGGCCTGGAAAGGGAATGCATTCTCGATTGTgtatggctgtttataaatcattactgtcatagagttatgcaaacaaacttatgtgatgaatcctaacacgacctttgatccta----tatctacag-------------------------------------------------------------------------------------

upper sequence: PP1S37_50V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv11s0016g02870.t01 (Vitis vinifera), 5'ss of exon 7
TTCCTATGCTGTGACTGTCTTGCAAACACTCCTTGGAGGAGGGGGGTCTTTTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccggcgcattggcaacagaagctggttcattgattatgtagcaggctgttcacgatttgtagaggcaggagcattttctgatgagtaaacttgccaatgagatttttgacctgaacatcgtatttgatttcttactttattttgatttatctgttttatttgcag
                         |  ||  | |||||||| || ||||| |||||||||||||||||||| || |||||||| ||| | | ||      | |||    | | |  |||     || |  |   ||||   ||    |       |||  |||| | |  |  | |||||   |  ||  ||                                                                              
-------------------------ATGCTAATGGGAGGAGGTGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTATgtaagtttctcagatacacacgtgtgcattcagagttt-taagttgaggttgagatacatgcaacacattttgcata--cttgtgcattcagtattgcatatg----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194671|gb|FC370062.1|FC370062
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162163192|gb|FC340246.1|FC340246
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|18332638|gb|BJ164651.1|BJ164651
EST:     TCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCGTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162215270|gb|FC391038.1|FC391038
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162183037|gb|FC360603.1|FC360603
EST:     GCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: GCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208391906|gb|DC949369.1|DC949369
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67727622|gb|BJ977881.1|BJ977881
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208369429|gb|DC955890.1|DC955890
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162206830|gb|FC382692.1|FC382692
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208366476|gb|DC955580.1|DC955580
EST:     GAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: GAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208364145|gb|DC950409.1|DC950409
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37851205|gb|BJ609213.1|BJ609213
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67724600|gb|BJ974859.1|BJ974859
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162195329|gb|FC369290.1|FC369290
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162183038|gb|FC360604.1|FC360604
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67724138|gb|BJ974397.1|BJ974397
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162195330|gb|FC369291.1|FC369291
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162197744|gb|FC374994.1|FC374994
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67725875|gb|BJ976134.1|BJ976134
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162167633|gb|FC344272.1|FC344272
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162196675|gb|FC374640.1|FC374640
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37825646|gb|BJ583712.1|BJ583712
EST:     TTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67727115|gb|BJ977374.1|BJ977374
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162159410|gb|FC335185.1|FC335185
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67720291|gb|BJ970550.1|BJ970550
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162176638|gb|FC352483.1|FC352483
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162194670|gb|FC370061.1|FC370061
EST:     TGCT-GTGGTCCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TGCTGGTGGT-CCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37852872|gb|BJ610880.1|BJ610880
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162165652|gb|FC341491.1|FC341491
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67726300|gb|BJ976559.1|BJ976559
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67725904|gb|BJ976163.1|BJ976163
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162163191|gb|FC340245.1|FC340245
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67724293|gb|BJ974552.1|BJ974552
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208394968|gb|DC915677.1|DC915677
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162198566|gb|FC374751.1|FC374751
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37847654|gb|BJ605662.1|BJ605662
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162196676|gb|FC374641.1|FC374641
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37825157|gb|BJ583223.1|BJ583223
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37852313|gb|BJ610321.1|BJ610321
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162215269|gb|FC391037.1|FC391037
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162162153|gb|FC337727.1|FC337727
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208373348|gb|DC948360.1|DC948360
EST:     TCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|18335529|gb|BJ167549.1|BJ167549
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162162152|gb|FC337726.1|FC337726
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67727612|gb|BJ977871.1|BJ977871
EST:     CCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: CCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37829784|gb|BJ587796.1|BJ587796
EST:     TGGAAAGGGAATGTACTCTCGATNGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37828257|gb|BJ586269.1|BJ586269
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37848796|gb|BJ606804.1|BJ606804
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162171783|gb|FC348439.1|FC348439
EST:     CTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: CTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67727678|gb|BJ977937.1|BJ977937
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67697716|gb|BJ957949.1|BJ957949
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37846038|gb|BJ604046.1|BJ604046
EST:     GAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: GAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162174437|gb|FC350716.1|FC350716
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|18335009|gb|BJ167027.1|BJ167027
EST:     AAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: AAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37847944|gb|BJ605952.1|BJ605952
EST:     CTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: CTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|67574305|gb|BJ947129.1|BJ947129
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCANTCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|208366198|gb|DC955299.1|DC955299
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|37829053|gb|BJ587065.1|BJ587065
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
EST: gi|162174438|gb|FC350717.1|FC350717
EST:     TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGG                         ATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC
genomic: TTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 9

TTCCTATGCTGTGACTGTCTTGCAAACACTCCTTGGAGGAGGGGGGTCTTTTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccgg ... ttatttgcagATCCTGAATAAGTGGGAGCAGGTGCAATCGTTCACAGCGTTCAACAGCGTCTACAACGACACTGGTCTCTTTGGAATCCACGCCACTTCTACTGGCGATT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCTATGCTGTGACTGTCTTGCAAACACTCCTTGGAGGAGGGGGGTCTTTTTCTGCTGGTGGTCCTGGAAAGGGAATGTACTCTCGATTGTATACAGGGgtaagaccggcgcattggcaacagaagctggttcattgattatgtagcaggctgttcacgatttgtagaggcaggagcattttctgatgagtaaacttgccaatgagatttttgacctgaacatcgtatttgatttcttactttattttgatttatctgttttatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG