1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGATCATTCGGAACAGAGGGGCGTAAGAAGGATGGCCCCCAGATCCCTGCTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaattagggttctaaggattttacacctctagataagctgccttagatgaattcttacttctacgggattgtgttgagtagcagtgtactcatgcccaagaaccatgttatttggactgatcttgcctcgtattatgttatcag
species | Physcomitrella patens |
transcript | PP1S35_195V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCAEST: gi|18356367|gb|BJ188426.1|BJ188426
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCA
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCAEST: gi|18354898|gb|BJ186957.1|BJ186957
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCA
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCAEST: gi|67508092|gb|BJ940963.1|BJ940963
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCA
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCAEST: gi|67717865|gb|BJ968124.1|BJ968124
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCA
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCAEST: gi|18355005|gb|BJ187064.1|BJ187064
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCA
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCAEST: gi|18332319|gb|BJ164332.1|BJ164332
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTCCTCCTCCA
EST: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAG GACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTC
genomic: CTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaatta ... atgttatcagGACTTACAAGTGAAGTCATCTCCACCTCCTCCCTTGCAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATCATTCGGAACAGAGGGGCGTAAGAAGGATGGCCCCCAGATCCCTGCTAGCGACAAAGTTTATGATTATATCATTTTCCGAGGATCGGATATCAAGgttagaattagggttctaaggattttacacctctagataagctgccttagatgaattcttacttctacgggattgtgttgagtagcagtgtactcatgcccaagaaccatgttatttggactgatcttgcctcgtattatgttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT