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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactaccttatcaagttcgatttttgtaagattttctactaagaaagatagaattttggaggaatgaggacctacatgatgttgtcatattagatat...

Basic information

species Physcomitrella patens
transcript PP1S34_107V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S34_107V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP05500 (Chlamydomonas reinhardtii), 5'ss of exon 3
CGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactaccttatcaagttcgatttttgtaagattttctactaagaaagatagaattttggaggaatgaggacctacatgatgttgtcatat-tagatat--
                     ||||||||||||||||| |||||| |||| ||||||||||| || |||||||||||||| ||||| ||||| || || ||| | | ||   |    |  |     | ||| |    |   |  ||        |  || || |         || ||  || |  |     | | || |   
---------------------GTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGGgtgagc-acgcgact--gccccgcgctagtatggagctgcccggagggcagagcagcttcggggagccctttgccaactggacggagaggggtgtcgacagcg

upper sequence: PP1S34_107V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ30111 (Selaginella moellendorffii), 5'ss of exon 2
CGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactaccttatcaagttcgatttttgtaagattttctactaagaaagatagaattttggaggaatgaggacctacatgatgttgtcatattagatat
 | || || || || || || |||||||| || || || |||||| |||| |||||||| ||||||||||||||||| |||||||| ||  | || |||||||| ||  ||        |||||       |   ||  |  |  |    |     || || ||                                    
AGGACGGGATCTCGCGGGCAAGTGACCCAAGTCCGGGTGAAGTTCCTGGACGACCAGAATCGTCTCATCATGCGCAATGTCAAGGGGCCGATCCGCGAAGgtaagct--ctcgatcctctcgatcgaatcgaagattgatctttggggctaatttcttgtgtag------------------------------------

upper sequence: PP1S34_107V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ08290 (Selaginella moellendorffii), 5'ss of exon 2
CGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc--ttatcaagttcgatttttgtaagattttctactaagaaagatagaattttggaggaatgaggacctacatgatgttgtcatattagatat
 | || || || || || || |||||||| || || || |||||| |||| |||||||| ||||||||||||||||| |||||||| ||  | || |||||||| ||  |  |  ||  | |||| |     ||||||      |  |  | ||    || || ||                                    
AGGACGGGATCTCGCGGGCAAGTGACCCAAGTCCGGGTGAAGTTCCTGGACGACCAGAATCGTCTCATCATGCGCAATGTCAAGGGGCCGATCCGCGAAGgtaagctctcgatcctctcgatcgaatcg---aagattgatctttggggcaaatttc-ttgtgtag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162237726|gb|FC413341.1|FC413341
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162247728|gb|FC423386.1|FC423386
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|18354218|gb|BJ186274.1|BJ186274
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162201587|gb|FC377443.1|FC377443
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162201662|gb|FC377466.1|FC377466
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|15327444|gb|BI488191.1|BI488191
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|18336172|gb|BJ168194.1|BJ168194
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67702749|gb|BJ962982.1|BJ962982
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162211247|gb|FC386959.1|FC386959
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162218568|gb|FC395145.1|FC395145
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162211248|gb|FC386960.1|FC386960
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162218567|gb|FC395144.1|FC395144
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTTTGACTCTCCTCGAGTTTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162211841|gb|FC387713.1|FC387713
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|19786586|gb|BQ040506.1|BQ040506
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162229639|gb|FC405102.1|FC405102
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162239564|gb|FC416846.1|FC416846
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67720259|gb|BJ970518.1|BJ970518
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162214155|gb|FC390201.1|FC390201
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162240199|gb|FC418326.1|FC418326
EST:     TGACCAGAACCCTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|7067210|gb|AW497065.1|AW497065
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAAGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|18327941|gb|BJ159945.1|BJ159945
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67576488|gb|BJ949312.1|BJ949312
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|37835690|gb|BJ593702.1|BJ593702
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|37832914|gb|BJ590926.1|BJ590926
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162201588|gb|FC377444.1|FC377444
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67695626|gb|BJ955859.1|BJ955859
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162211840|gb|FC387712.1|FC387712
EST:     TGACCAGAACCGTTTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTTTCCTCGAGTTTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162249572|gb|FC426478.1|FC426478
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162246074|gb|FC421911.1|FC421911
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67721255|gb|BJ971514.1|BJ971514
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67692460|gb|BJ952693.1|BJ952693
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162221848|gb|FC398415.1|FC398415
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162230334|gb|FC406898.1|FC406898
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|18355970|gb|BJ188029.1|BJ188029
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162226719|gb|FC402764.1|FC402764
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67700171|gb|BJ960404.1|BJ960404
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162234671|gb|FC410417.1|FC410417
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162240200|gb|FC418327.1|FC418327
EST:     TGACCAGAACCCTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162209896|gb|FC386038.1|FC386038
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67576637|gb|BJ949461.1|BJ949461
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162211861|gb|FC387733.1|FC387733
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|162225153|gb|FC402193.1|FC402193
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|67572259|gb|BJ945083.1|BJ945083
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
EST: gi|19781535|gb|BQ039732.1|BQ039732
EST:     TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAG                         GTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT
genomic: TGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 71

CGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactacc ... gactttgcagGTGACATTCTGACTCTCCTCGAGTCTGAGCGTGAAGCAAGAAGGTTGCGGTAAGGAACAGTCTGCAATGGCAATTCAATGATGCAGTATCGGAAGTTCAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGAACCGTCTCATCATGCGCAACGTCAAGGGACCCGTGCGTGAAGgtaaactaccttatcaagttcgatttttgtaagattttctactaagaaagatagaattttggaggaatgaggacctacatgatgttgtcatattagatat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaga