1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGGAAATACCCTTCGGTGGTCACGGGATACACCACTCAGTACACGTTTCACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgacttttcctgctatttccttcactatgaaaagctagccaaaagcattacagtgaatcttctgagccagtattggtcgcttgaaaatctaaagaa...
species | Physcomitrella patens |
transcript | PP1S33_340V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGTEST: gi|67578014|gb|BJ950181.1|BJ950181
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAEST: gi|162169673|gb|FC345613.1|FC345613
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGA
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGTEST: gi|162164698|gb|FC340745.1|FC340745
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGTEST: gi|162150500|gb|FC326148.1|FC326148
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGTEST: gi|67568760|gb|BJ941584.1|BJ941584
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGTEST: gi|100447326|gb|CJ971625.1|CJ971625
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACNAAGTTGGGGAAGAAGAGGAAGGTGCCCGTEST: gi|100390245|gb|BY952653.1|BY952653
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
EST: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAG TTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
genomic: ACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgactt ... tgtgctgcagTTCAACACCAAGTATTTCTACAAAGTTGGGGAAGAGGAGGAAGGTGCCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAAATACCCTTCGGTGGTCACGGGATACACCACTCAGTACACGTTTCACAACTATACATCTGGTTTCATTCACCATGTGGTTATTTCCGACTTGGAGgtattgacttttcctgctatttccttcactatgaaaagctagccaaaagcattacagtgaatcttctgagccagtattggtcgcttgaaaatctaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG