1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCACGGCGTGAAGGATTCGGAATCTATTGCTGACCATATGTACCGCATGGCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAGgtgagcatcatctcacttcgttgattgaatgtgccctttcgagcaagttattcaaatagtaggtgtctacttgagatttttattgtaaaattttgcttggtgttcatcaccttcatggcaatgcag
species | Physcomitrella patens |
transcript | PP1S33_22V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAG GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGEST: gi|208395117|gb|DC923916.1|DC923916
genomic: GCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAGgtgagcatca ... ggcaatgcagGTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG
EST: GCAGTCATGGCTATT-TCTCAGGAGATTTACCAGGTGTGAACAAAGATAG GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGGEST: gi|208368094|gb|DC947654.1|DC947654
genomic: GCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAGgtgagcatca ... ggcaatgcagGTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG
EST: GCAGTCATGGCTATT-TCTCAGGAGATTTACCAGGTGTGAACAAAGATAG GTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG
genomic: GCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAGgtgagcatca ... ggcaatgcagGTGTGTAAAGATGGCCGTGGTGCATGACATTGCCGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACGGCGTGAAGGATTCGGAATCTATTGCTGACCATATGTACCGCATGGCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAGgtgagcatcatctcacttcgttgattgaatgtgccctttcgagcaagttattcaaatagtaggtgtctacttgagatttttattgtaaaattttgcttggtgttcatcaccttcatggcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT