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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGATCGGGCGATTGTGGATCCGGACTCGTGTTCAACAATAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatcgctgaagtagaacaaattaaactcatcgactgaatttttgccgtctcctgaactgtcgaaatagagcttgaaaatttgattgatagtgat...

Basic information

species Physcomitrella patens
transcript PP1S337_21V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208400190|gb|DC908851.1|DC908851
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100365718|gb|BY948377.1|BY948377
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100418859|gb|BY975774.1|BY975774
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|67704294|gb|BJ964527.1|BJ964527
EST:     TAGGCTGGATTCTCTTCTGTTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100417960|gb|BY993269.1|BY993269
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100400442|gb|BY954479.1|BY954479
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100437036|gb|BY979651.1|BY979651
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100422934|gb|BY958072.1|BY958072
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100392377|gb|BY953332.1|BY953332
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
EST: gi|100431450|gb|BY960203.1|BY960203
EST:     TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGG                         GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG
genomic: TAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatc ... ggttgggcagGTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGGATCGGGCGATTGTGGATCCGGACTCGTGTTCAACAATAGGCTGGATTCTCTTCTATTGCGATTGGCCAGTTCTTACATGCAATCGGgtacacgatcgctgaagtagaacaaattaaactcatcgactgaatttttgccgtctcctgaactgtcgaaatagagcttgaaaatttgattgatagtgat

- - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaacaaa