1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtagaaatgtgctcttatttattttcgttttttctgacaattgccttccggcattatgttgcttctgaattagtcttggcgagtctctgtacttt...
species | Physcomitrella patens |
transcript | PP1S332_23V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG GTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTAEST: gi|100360347|gb|BY966126.1|BY966126
genomic: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtaga ... ttttgtgcagGTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTA
EST: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG GTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTAEST: gi|162219572|gb|FC395568.1|FC395568
genomic: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtaga ... ttttgtgcagGTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTA
EST: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG GTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTAEST: gi|18350788|gb|BJ182839.1|BJ182839
genomic: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtaga ... ttttgtgcagGTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTA
EST: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG GTAAGGTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGEST: gi|18359944|gb|BJ192005.1|BJ192005
genomic: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtaga ... ttttgtgcagGT-----CCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCG
EST: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG GTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTA
genomic: CAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtaga ... ttttgtgcagGTCCGATGAATATCGTATTGGAGCAAGAAAAACGATTCTTACAGCGAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAGgtaaggtagaaatgtgctcttatttattttcgttttttctgacaattgccttccggcattatgttgcttctgaattagtcttggcgagtctctgtacttt
- - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - TGAAGC