1 5' 3' | 2 5' 3' | 3 5' 3' |
TAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAGgtgagttgacttgttgacagcgcttgttgttcaaggtgttagggtttaggacgtgggaagggcagacgatgtgaaggttttgaggttggggttttagggtaaggtgttgtggaggtgcctgtgagcttgaattgtgaagtgttgttgcttgagcag
species | Physcomitrella patens |
transcript | PP1S328_43V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAG GAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCAEST: gi|18349548|gb|BJ181598.1|BJ181598
genomic: ATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAGgtgagttgac ... gcttgagcagGAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCA
EST: ATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAG GAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCAEST: gi|100442228|gb|BY981252.1|BY981252
genomic: ATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAGgtgagttgac ... gcttgagcagGAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCA
EST: ATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAG GAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCGEST: gi|37828507|gb|BJ586519.1|BJ586519
genomic: ATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAGgtgagttgac ... gcttgagcagGAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCA
EST: TGCCGAAATNGTGACCACCAG GAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCAEST: gi|162235856|gb|FC412407.1|FC412407
genomic: TGCCGAAATTGTGACCACCAGgtgagttgac ... gcttgagcagGAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCA
EST: CCGAAATTGTGACCACCAG GAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCA
genomic: CCGAAATTGTGACCACCAGgtgagttgac ... gcttgagcagGAGGTTGCGGACAATAATTGCGTGTACAGAAATGAGGTGCTCCACAGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAGgtgagttgacttgttgacagcgcttgttgttcaaggtgttagggtttaggacgtgggaagggcagacgatgtgaaggttttgaggttggggttttagggtaaggtgttgtggaggtgcctgtgagcttgaattgtgaagtgttgttgcttgagcag
- - - - - - - - - - - - - - - - - AAGAAG