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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGGTGGAGGCATGGAAACCGATTGTGAAGGCGGTACATGATAAGGGTGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatcagccgcagattacattgtgcatgtagaagatgacaccctagcttgctcgaatttcgtgcccaaagcatcaaattgcgtggggttttcagtttcccaaccttcctaaatttttttcagagcgacttagttctcaatttcacgcgtttcgcattgacttgtgcacag

Basic information

species Physcomitrella patens
transcript PP1S326_44V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S326_44V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ20558 (Selaginella moellendorffii), 5'ss of exon 3
GAGCAGGTGGAGGCATGGAAACCGATTGTGAAGGCGGTACATGATAAGGGTGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatcagccgcagattacattgtgcatgtagaagatgacaccctagcttgctcgaatttcgtgcccaaagcatcaaattgcgtggggttttcagtttcccaaccttcctaaatttttttcagagcgacttagttctcaatttcacgcgtttcgcattgacttgtgcacag
||||| ||||||||||||||||||||||| ||||| || ||||| || || || || ||  |||  ||||| ||||| || ||  | ||||| || || |||||  | ||   | |   |  |  | |   | |      |  | | ||  ||  ||     |  |||    | |  || || |   |    ||  |  || |     |||||                                                              
GAGCAAGTGGAGGCATGGAAACCGATTGTCAAGGCAGTGCATGACAAAGGGGGCATATTTTTCTTGCAGATATGGCATGTTGGAAGAGTTTCACATACATgtaacctctctctctc---tctctctctctctctc-----tctctctctctctctctgtgtgtgtgtgtgtgatgtttctaactctttttctttggcctttgcggcgtcttccag------------------------------------------------------------

upper sequence: PP1S326_44V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ28624 (Selaginella moellendorffii), 5'ss of exon 3
GAGCAGGTGGAGGCATGGAAACCGATTGTGAAGGCGGTACATGATAAGGGTGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatcagccgcagattacattgtgcatgtagaagatgacaccctagcttgctcgaatttcgtgcccaaagcatcaaattgcgtggggttttcagtttcccaaccttcctaaatttttttcagagcgacttagttctcaatttcacgcgtttcgcattgacttgtgcacag
||||| ||||||||||||||||||||||| ||||| || ||||| || || || || ||  |||  ||||| ||||| || ||  | ||||| || || |||||    ||   | |    |   |    |          |  | | ||  ||  |||    |  ||     | |  || || |        ||  |  || |     |||||                                                              
GAGCAAGTGGAGGCATGGAAACCGATTGTCAAGGCAGTGCATGACAAAGGGGGCATATTTTTCTTGCAGATATGGCATGTTGGAAGAGTTTCACATACATgtaacacctctctctctctctctctctctctctc------tctctctctctctctctctctctgtgtttgtgatgtttctaactcttcttctttggcctttgcggcgtcttccag------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100425789|gb|BY977121.1|BY977121
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAG-CCATNC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCAT-C
EST: gi|100402410|gb|BY954822.1|BY954822
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100354396|gb|BY945851.1|BY945851
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCCACCA-CAAGGCCATC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCC-ACCAACAAGGCCATC
EST: gi|100394729|gb|BY989898.1|BY989898
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162255693|gb|FC432107.1|FC432107
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100399324|gb|BY954313.1|BY954313
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTTCCAC-AACAAGGCCCAT
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTT-CCACCAACAAGGCC-AT
EST: gi|100450286|gb|CJ974187.1|CJ974187
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100443116|gb|BY981742.1|BY981742
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGGTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162190030|gb|FC366604.1|FC366604
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162207132|gb|FC382454.1|FC382454
EST:     TCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACNCTTCTTCCACCAACAAGGCCATC
genomic: TCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCAC-CTTCTTCCACCAACAAGGCCATC
EST: gi|100420399|gb|BY976005.1|BY976005
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCCATC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCC-ATC
EST: gi|100395913|gb|BY972190.1|BY972190
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162270458|gb|FC447574.1|FC447574
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162250736|gb|FC426585.1|FC426585
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162174791|gb|FC352207.1|FC352207
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162197304|gb|FC372266.1|FC372266
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|67572529|gb|BJ945353.1|BJ945353
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|67508373|gb|BJ941240.1|BJ941240
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100392017|gb|BY953182.1|BY953182
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100446477|gb|CJ970776.1|CJ970776
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100443502|gb|BY981929.1|BY981929
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCA-CAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162168624|gb|FC343886.1|FC343886
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100391094|gb|BY953104.1|BY953104
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCCAC-AACA-GGCCATC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCC-ACCAACAAGGCCATC
EST: gi|100445506|gb|CJ975655.1|CJ975655
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162256915|gb|FC433017.1|FC433017
EST:     GGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCNGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: GGAATCTTCCTCTGCCAGATTTGGCACGTCGGCC-GGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162158211|gb|FC335254.1|FC335254
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162188772|gb|FC364058.1|FC364058
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100354793|gb|BY983568.1|BY983568
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162170784|gb|FC347398.1|FC347398
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100393432|gb|BY953397.1|BY953397
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCCACTTTCTCCCCACAAACA-GGC-AT
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCC-ACCTTCTTCC-ACCAACAAGGCCAT
EST: gi|162239008|gb|FC416186.1|FC416186
EST:     TCTTCCTCTGCCAGATTTGGCACGTCGGCCGGNGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TCTTCCTCTGCCAGATTTGGCACGTCGGCCGG-GTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162203711|gb|FC378586.1|FC378586
EST:     GCCGAGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: GCCG-GGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162224237|gb|FC400120.1|FC400120
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100374622|gb|BY985860.1|BY985860
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCCTTCTTCCAC-AACAAGGCCATC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACC-TTCTTCCACCAACAAGGCCATC
EST: gi|100388030|gb|BY988503.1|BY988503
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100447894|gb|CJ972193.1|CJ972193
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|208391257|gb|DC933518.1|DC933518
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162183879|gb|FC360185.1|FC360185
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162224610|gb|FC400506.1|FC400506
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100396845|gb|BY953856.1|BY953856
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100386444|gb|BY951240.1|BY951240
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCCAATGGAGCCGCGCCACCTTTCTTCCACCAACAAGGCCATC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTT-CTTCCACCAACAAGGCCATC
EST: gi|100360174|gb|BY966057.1|BY966057
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCCAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162226608|gb|FC403628.1|FC403628
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162180676|gb|FC357761.1|FC357761
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162160138|gb|FC336008.1|FC336008
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100360770|gb|BY965892.1|BY965892
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCA-CAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100414190|gb|BY992655.1|BY992655
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162275781|gb|FC451134.1|FC451134
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|208394286|gb|DC904106.1|DC904106
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100451521|gb|CJ974808.1|CJ974808
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100448536|gb|CJ972835.1|CJ972835
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGC
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGC
EST: gi|162178189|gb|FC354907.1|FC354907
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162155857|gb|FC332406.1|FC332406
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100395422|gb|BY953703.1|BY953703
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|162194421|gb|FC371100.1|FC371100
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100352678|gb|BY945392.1|BY945392
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCA
EST: gi|100387214|gb|BY970358.1|BY970358
EST:     TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTT                         CATATCATCCAAATGGAGCCGCGCCACCTTTCTTC-ACCAANCA-GGCCAT
genomic: TGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTT-CTTCCACCAA-CAAGGCCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 33 (downstream exon)
Score: 16

GAGCAGGTGGAGGCATGGAAACCGATTGTGAAGGCGGTACATGATAAGGGTGGAATCTTCCTCTGCCAGATTTGGCACGTCGGCCGGGTTTCTCACACTTgtaagttatc ... ttgtgcacagCATATCATCCAAATGGAGCCGCGCCACCTTCTTCCACCAACAAGGCCATCAAGGAGGGCGTGGTGTACCTGCCAACAGCGGACGGAGCGGCCCCATACTC




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