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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAAGCTGAATTTGTCGTTGATGGAGCATTATGAACGGCATTGTCCGCCGAATCATCTCCGCCTGAATTGTCTCATCCCACCCCCTCCAAATTACAAGgtactgtgaacatccccttctaaaactttgtccatttatgtgcttggtttacgggaagtcaagacgaaataaggtattcaatcagtccacaatgggcacccaaccagcagctgtcatctcactcttgaattgatctattgtacaccattgagggaag

Basic information

species Physcomitrella patens
transcript PP1S322_38V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S322_38V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT4G14360.2 (Arabidopsis thaliana), 5'ss of exon 3
ACTGAAGCTGAATTTGTCGTTGATGGAGCATTATGAACGGCATTGTCCGCCGAATCATCTCCGCCTGAATTGTCTCATCCCACCCCCTCCAAATTACAAGgta-ctgtgaacatccccttctaaaactttgtccatttatgtgcttggtttacgggaagtcaagacgaaataaggtattcaatcagtccacaatgggcacccaaccagcagctgtcatctcactcttgaattgatctattgtacaccattgagggaag
| |||||||| ||||||| |||||||||||||||||||| |||||||| ||   | |    ||  | |||||  | || || || |||      || |||||  || |  | ||    || || |  ||| || ||     || || ||| |||       | |||  ||     |  ||   || |      | |                                                              
ATTGAAGCTGGATTTGTCTTTGATGGAGCATTATGAACGTCATTGTCCTCCTCCTGAGAGACGATTCAATTGCTTGATTCCGCCTCCTAATGGATATAAGgtgtctatcgatatg---ttatacagttttatcgat----atgattagtt-acg-------atgacataactgttttctcttccaatatgttttag--------------------------------------------------------------

upper sequence: PP1S322_38V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT3G23300.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTGAAGCTGAATTTGTCGTTGATGGAGCATTATGAACGGCATTGTCCGCCGAATCATCTCCGCCTGAATTGTCTCATCCCACCCCCTCCAAATTACAAGgtactgtgaacatccccttctaaaactttgtccatttatgtgcttggt-ttacgggaagtcaagacgaaataaggtat-tcaatcagtccacaatgggcacccaaccagcagctgtcatctcactcttgaattgatctattgtacaccattgagggaag
| |||||||  ||||||| |||||||||||||||||||| || ||||| ||   | |     |  | |||||  | || || || ||||||   || |||||  ||| |        ||||  | ||||||    | || || |  || |   |  |  |   || |   |    ||| | |||  ||| |                                                                    
ATTGAAGCTTGATTTGTCTTTGATGGAGCATTATGAACGTCACTGTCCTCCTCCTGAAAGGAGGTTTAATTGCTTGATTCCTCCTCCTCCAGGGTATAAGgtg-tgtta-------tttctctagctttgt----tgatatgatcagtgtcttgacatattttgaagtttttttctatgtgaatgtgtctag-------------------------------------------------------------------