1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCGAGCTCGCCGAAGATGGCTATTCTGGAGTGGAAGTGCGCGTCACTCCCATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaaccagctctgtcaagttcatcggtgacgtcgtgttctagaacgaagaaagatcagggcttttaggcggaattttttatcgtatgagttcagaggattaaggtagggcgtgttgtctgcag
species | Physcomitrella patens |
transcript | PP1S31_178V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162278299|gb|FC454177.1|FC454177
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|18328342|gb|BJ160346.1|BJ160346
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|18372625|gb|BJ204227.1|BJ204227
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162208528|gb|FC384491.1|FC384491
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162265194|gb|FC441281.1|FC441281
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|67727225|gb|BJ977484.1|BJ977484
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162265193|gb|FC441280.1|FC441280
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162232977|gb|FC407565.1|FC407565
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|37843467|gb|BJ601475.1|BJ601475
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|18359275|gb|BJ191335.1|BJ191335
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|67718871|gb|BJ969130.1|BJ969130
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162277242|gb|FC453672.1|FC453672
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|18349896|gb|BJ181947.1|BJ181947
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162259149|gb|FC435195.1|FC435195
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162259148|gb|FC435194.1|FC435194
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162206671|gb|FC382429.1|FC382429
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162208527|gb|FC384490.1|FC384490
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|18372947|gb|BJ204549.1|BJ204549
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162277243|gb|FC453673.1|FC453673
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|37828865|gb|BJ586877.1|BJ586877
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162271940|gb|FC448150.1|FC448150
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|37852687|gb|BJ610695.1|BJ610695
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: ATGCGGACCGAGATCATTCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162271941|gb|FC448151.1|FC448151
genomic: ATGCGGACCGAGATCA-TCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|67702967|gb|BJ963200.1|BJ963200
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|162206672|gb|FC382430.1|FC382430
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGTEST: gi|37852142|gb|BJ610150.1|BJ610150
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
EST: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGG GTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
genomic: CATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaacc ... ttgtctgcagGTGAGAAGGGACGCAGGATCAGGGAATTGACTTCCGTGGTTCAGAAACGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGAGCTCGCCGAAGATGGCTATTCTGGAGTGGAAGTGCGCGTCACTCCCATGCGGACCGAGATCATCATCCGCGCTACCCGCACACAGAATGTTTTGGgtaggtaaccagctctgtcaagttcatcggtgacgtcgtgttctagaacgaagaaagatcagggcttttaggcggaattttttatcgtatgagttcagaggattaaggtagggcgtgttgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA